Gene detail information of Glyur000028s00003492.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G19480.23.00E-118DNA glycosylase superfamily protein
NRXP_004501010.10PREDICTED: DNA-3-methyladenine glycosylase 1-like isoform X1 [Cicer arietinum]
COGYP_003267890.11.00E-48DNA-3-methyladenine glycosylase II [Haliangium ochraceum DSM 14365]
trEMBLtr|I1JTA6|I1JTA6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G03390.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000288261786753+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01247alkA EC:3.2.2.21 Base excision repair map03410


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000028s00003492.1PF00730.20HhH-GPD1733176.10E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control65.630
SRR1783600control66.505
SRR1783602moderate drought stress60.202
SRR1811619moderate drought stress59.140

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain70.812
DRR006520Root Summer glycyrrhizin high producing strain70.245
DRR006521Root Winter glycyrrhizin high producing strain46.362
DRR006522Root Winter glycyrrhizin high producing strain44.811
DRR006523Root Summer glycyrrhizin low producing strain35.467
DRR006524Root Summer glycyrrhizin low producing strain35.601
DRR006525Leaf Summer glycyrrhizin high producing strain34.703
DRR006526Leaf Summer glycyrrhizin high producing strain34.348

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.040
SRR2868004Drought Stress(Tissue:root)38.975
SRR2967015Control (Tissue:root)37.573

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.451
SRR9715740Leave31.052
SRR9715741Leave32.708
SRR9715739Root46.569
SRR9715742Root55.250
SRR9715743Root46.779

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.837
SRR8749028MeJA induced 9h30.180
SRR8749029MeJA induced 9h24.829
SRR8749030Uninduced21.739
SRR8749031Uninduced13.727
SRR8749032Uninduced18.141

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.896
SRR8400027Control-Root37.802

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved