Gene detail information of Glyur000028s00003510.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G75330.15.00E-153ornithine carbamoyltransferase
NRAFK40064.10unknown [Lotus japonicus]
COGYP_001997178.15.00E-107ornithine carbamoyltransferase [Chloroherpeton thalassium ATCC 35110]
Swissprottr|Q43814|OTC_PEA0Ornithine carbamoyltransferase, chloroplastic (Precursor)
trEMBLtr|I3SIH2|I3SIH2_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK40064.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00028161222164438-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00611OTC, argF, argI EC:2.1.3.3 Biosynthesis of amino acids map01230
Arginine biosynthesismap00220


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process

GO:0006591  ornithine metabolic process


molecular_function

GO:0004585  ornithine carbamoyltransferase activity

GO:0016597  amino acid binding

GO:0016743  carboxyl- or carbamoyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000028s00003510.1PF02729.16OTCace_N622043.60E-44
Glyur000028s00003510.1PF00185.19OTCace2093603.40E-50


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control118.890
SRR1783600control119.716
SRR1783602moderate drought stress62.176
SRR1811619moderate drought stress61.778

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain104.313
DRR006520Root Summer glycyrrhizin high producing strain104.164
DRR006521Root Winter glycyrrhizin high producing strain27.652
DRR006522Root Winter glycyrrhizin high producing strain26.757
DRR006523Root Summer glycyrrhizin low producing strain63.964
DRR006524Root Summer glycyrrhizin low producing strain63.627
DRR006525Leaf Summer glycyrrhizin high producing strain44.762
DRR006526Leaf Summer glycyrrhizin high producing strain44.706

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)95.932
SRR2868004Drought Stress(Tissue:root)50.598
SRR2967015Control (Tissue:root)48.677

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.216
SRR9715740Leave43.107
SRR9715741Leave30.489
SRR9715739Root74.798
SRR9715742Root73.883
SRR9715743Root71.603

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h82.153
SRR8749028MeJA induced 9h48.430
SRR8749029MeJA induced 9h44.507
SRR8749030Uninduced8.433
SRR8749031Uninduced3.416
SRR8749032Uninduced6.807

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root104.144
SRR8400027Control-Root94.950

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved