Gene detail information of Glyur000028s00003511.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66460.1 | 3.00E-25 | Glycosyl hydrolase superfamily protein |
| NR | XP_003528027.1 | 8.47E-38 | PREDICTED: mannan endo-1,4-beta-mannosidase 7-like [Glycine max] |
| COG | YP_003324408.1 | 5.00E-10 | glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798] |
| Swissprot | tr|Q9FJZ3|MAN7_ARATH | 5.00E-29 | Mannan endo-1,4-beta-mannosidase 7 (Precursor) |
| trEMBL | tr|I1K7Q5|I1K7Q5_SOYBN | 3.00E-38 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G03350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 164258 | 165335 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K19355 | MAN | EC:3.2.1.78 | Fructose and mannose metabolism | map00051 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 80.663 |
| SRR1783600 | control | 79.391 |
| SRR1783602 | moderate drought stress | 13.397 |
| SRR1811619 | moderate drought stress | 18.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.781 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.783 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.067 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.385 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.384 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.352 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.353 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.575 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.624 |
| SRR2967015 | Control (Tissue:root) | 3.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.138 |
| SRR9715740 | Leave | 1.554 |
| SRR9715741 | Leave | 2.989 |
| SRR9715739 | Root | 3.432 |
| SRR9715742 | Root | 4.237 |
| SRR9715743 | Root | 3.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.254 |
| SRR8749028 | MeJA induced 9h | 3.339 |
| SRR8749029 | MeJA induced 9h | 3.002 |
| SRR8749030 | Uninduced | 0.117 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 48.162 |
| SRR8400027 | Control-Root | 48.790 |