Gene detail information of Glyur000028s00003512.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66460.1 | 3.00E-32 | Glycosyl hydrolase superfamily protein |
| NR | KEH36174.1 | 7.81E-73 | mannan endo-1,4-beta-mannosidase-like protein [Medicago truncatula] |
| Swissprot | tr|Q0JKM9|MAN1_ORYSJ | 9.00E-40 | Mannan endo-1,4-beta-mannosidase 1 (Precursor) |
| trEMBL | tr|A0A072V2A7|A0A072V2A7_MEDTR | 3.00E-73 | Mannan endo-1,4-beta-mannosidase-like protein {ECO:0000313|EMBL:KEH36174.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 168757 | 169212 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K19355 | MAN | EC:3.2.1.78 | Fructose and mannose metabolism | map00051 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.798 |
| SRR1783600 | control | 31.048 |
| SRR1783602 | moderate drought stress | 12.702 |
| SRR1811619 | moderate drought stress | 12.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.073 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.725 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.731 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.478 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.791 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.615 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.555 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.210 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.539 |
| SRR2967015 | Control (Tissue:root) | 4.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.828 |
| SRR9715740 | Leave | 6.748 |
| SRR9715741 | Leave | 4.810 |
| SRR9715739 | Root | 8.529 |
| SRR9715742 | Root | 5.687 |
| SRR9715743 | Root | 5.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.399 |
| SRR8749028 | MeJA induced 9h | 3.829 |
| SRR8749029 | MeJA induced 9h | 3.527 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.168 |
| SRR8749032 | Uninduced | 0.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 45.608 |
| SRR8400027 | Control-Root | 43.194 |