Gene detail information of Glyur000028s00003533.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75400.1 | 5.00E-92 | RING/U-box superfamily protein |
| NR | XP_003523771.1 | 0 | PREDICTED: uncharacterized protein LOC100793040 isoform X1 [Glycine max] |
| trEMBL | tr|I1JT82|I1JT82_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G03190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 280934 | 284627 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.371 |
| SRR1783600 | control | 19.215 |
| SRR1783602 | moderate drought stress | 20.188 |
| SRR1811619 | moderate drought stress | 20.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.797 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.183 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.029 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.606 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.578 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.796 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.288 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.314 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.654 |
| SRR2967015 | Control (Tissue:root) | 18.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.250 |
| SRR9715740 | Leave | 17.375 |
| SRR9715741 | Leave | 13.803 |
| SRR9715739 | Root | 10.094 |
| SRR9715742 | Root | 14.287 |
| SRR9715743 | Root | 14.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.048 |
| SRR8749028 | MeJA induced 9h | 17.429 |
| SRR8749029 | MeJA induced 9h | 11.654 |
| SRR8749030 | Uninduced | 12.616 |
| SRR8749031 | Uninduced | 10.985 |
| SRR8749032 | Uninduced | 11.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.279 |
| SRR8400027 | Control-Root | 21.218 |