Gene detail

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Gene detail information of Glyur000028s00003539.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75450.1	0	cytokinin oxidase 5
NR	XP_004500976.1	0	PREDICTED: cytokinin dehydrogenase 5-like isoform X1 [Cicer arietinum]
COG	YP_001547531.1	3.00E-71	FAD linked oxidase domain-containing protein [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|Q67YU0\|CKX5_ARATH	0	Cytokinin dehydrogenase 5 (Precursor)
trEMBL	tr\|A0A072V4C4\|A0A072V4C4_MEDTR	0	Cytokinin oxidase/dehydrogenase-like protein {ECO:0000313\|EMBL:KEH36208.1}

Sequence

Transcript Sequence

>Glyur000028s00003539.1
ATGGCCGTGAAAAACAACAGCAAGTTTCTTCTGTTGGCATTTGCAATATGGCGTTTAATAGTGACGGTGGGATTGACGGTGGTGCCGACGGACCTAGGGGGAGGAGGNGGAGGACTTCTGGAGGGTATAAAAGTGAGCGTGGAGGCGTCGGAGGTGGAAGCGGCGTCAGTGGATTTCGGGATGCTGAGCAGAGGAGAGGCGGCGGCGCTGGCGGTGGTGAGGCCAGCGTCGGCAGATGACGTGGCAAGGGTGGTGGAGGCGGCGTACGGGTGGGGGTTGGCGGTGTCGGCGAGAGGGCACGGGCACTCCATAAACGGGCAGGCGTGGACGAGGAGGAAAGGGGTGGTGGTGGAGATGGGTCATAAGGCCGGTGAAGGAGTGAGTGTGAGTCCACGAGTGTGGGAGAAGGGAATGTATGTGGACGTGTGGGGTGGGGAGTTGTGGATAGAGGTGTTGAGGGCAACACTTNAGTATGGGCTGGCACCCATGTCCTGGACCGATTACTTGTATCTCTCTGTGGGTGGAACCCTCTCCAATGCTGGTATTAGTGGTCAGACCTTCAATCACGGTCCTCAAATCTCCAATGTTCTTCAGCTCGATGTCGTTACAGGAAAGGGTGAGCTGTTGACGTGTTCAGAACATCGCAACTCAGACTTGTTCCATGCTGTTCTTGGTGGTCTTGGACAATTCGGAATCATCACACGGGCTAGAATTGCTCTAGAACCGGCTCCTCACAGAGTTCGTTGGATACGGGTACTGTACTCCAATTTTTCAACCTTTTGTAAGGACCAGGAGTTTCTCATCTCCCTTCATGGGAAACCAGCGAGCCAGAGATTCGACTATGTTGAAGGTTTTGTAATAGTGGATGAAGGACTCATCAATAATTGGAGGTCCTCCTTCTTTTCACCGAGTAACCCGGTTAAAATCAGTTCCCTAAATGCTGATGGAGGTGTTTTGTACTGCTTGGAGATTACCAGAAACTACCACCAAGGAAACGAAGATTCTGTTGATGAGGAAATACAGGCTCTGTTGAAAAAGTTAGATTTTATACCGACATCAGTGTTCACAACGGACCTGCCTTATGTGGATTTTCTGGATCGTGTACACAAGGCAGAACTGAAGCTTAGATCCAAAGGCTTATGGGACGTACCACATCCATGGCTCAACCTTTTTGTTCCAAAATCAAGGATAGCNGACTTCGACAAGGGTGTGTTCAAGGGCATTCTGGGCAATAAGACAAGTGGGCCTATCCTTATTTACCCTATGAACAAAAACAAGTGGGACCATCGGAGCTCGGTGGTGACACCAGACGAGGATNTGTTTTACCTGGTGGCATTTCTGAGATCAGCTTTGGATGCTGAGACACTGGAGTACCTGACTAATCAGAACCGTCAGATTCTGAGATTCTGCCATGATTCGGAGATCAAGGTGAAACAGTACCTGCCCCATTACACAACGCAGCAGGAGTGGATGGACCACTTTGGAGATAAGTGGACCCAATTCAATGCCATGAAGATGCAATTCGACCCTCGTCGAATCTTAGCAACAGGCCAGCGAATATTTGAATTTGATCCTTCCACGGCCCTCACCAAGGATGATATGTAATTAATGTAGCAAAACAAATTCGGAAGGACAAAAGTGGAAAATGATAAAAATAATTAGAGAAAGGATTATTAACCAGTGTAGAAAATAAACAGTGTTGTACTATCATGACTAGGCAAGGAGCACGTCAAATAAATTGGAAATACAAGGATGGTCACAGCAAATTATTTTCAAGAATTACAAACAGAGGGCCCTGTTTCTCTAACTGCGGTGTAAAAGTGCAAGAGTAGTTGAGGCGTTGCTATCTGAGATTACTGGGAATCATGGAGTTGGGTTAAGACTTAAGATTGCCATACATGAGCAACTCGCATGGTAAAGGTCCAATAAGTGGGAGATGATGTTAGAGAGTGGTGGGGCCTTTTTTGCAGGGGAGTGGGGATGACAATATGCACATGACATGTTTCAGTGCAGCGCCCGTGATCCCGACCGTCCGTCTGATTTGGTTGTCTTGGTCCACAAACAAGCAGCTGTTTCCAGTTCCACTTCTCTGGATGTTTCCCATCTTCTGTGTTTTCACCCTTCAATAAAAAGAAAAAAAGCTTTTAACCTTTCCTTACCAATCCAAATTCCTTGTACATATAATAATTTCTTCTAGATATATTAGAGCTGTCTATCTTTTAAATCTTTGGACAATTCTACTCCCTCTCCCATCCTACATTCAATTTCTATACTTGAAAAGAGACAGATAGGAAGGGGAAGAGATACAAGGGAGAGATGAGATGGGTAATGTGATGGGAAAAGAGAGAGAGAGAAATTAAGAGAATAAATAAGGTGTGAAAAGTAAATGAGAGAAAAGTGGGGCAATTTATACTCTCAATCTTTTAGCTACAAGAAGCAAGTAGTGCAAGCGAGATCAAAACAAATGTAAACCGGATCGAACCACCATGTGAATTCATATANCAATTACTGATTATTTTATCCATGTATTTCCACAATATCTAATTACAGTGACTCTTTATAAAACGAAATGATCAGTGTTTGTGAATAATGATAATAAGTTAATCACAATGAAGGGAACTCTTGTTTTTGGAAGTTAAGGAAGTACAATGACAAAAAGGGAAACAAAATTAAAAATCAGAAGTTCGANGCGACCTCTACCACGTACAAAGCAGGCTCTCTGCACTTGATGGCTTTTGATACATCGTCAATGCCTTCCAATGTGTCAGCTCGCTAGCGCATCATCATGAAACTTCAAGAGCCCGTAATCAGAGAGCCTAATTCTTACTTCCCAAAGGGAACACGATCTGTTTATGCATAGGCAACAGTTTATCATTATTTGAACAATGTTA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00028	316665	325156	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00279	CKX	EC:1.5.99.12	Zeatin biosynthesis	map00908

Gene Ontology

biological_process

GO:0009690 cytokinin metabolic process

GO:0055114 oxidation-reduction process

molecular_function GO:0003824 catalytic activity GO:0008762 UDP-N-acetylmuramate dehydrogenase activity GO:0016491 oxidoreductase activity GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO:0019139 cytokinin dehydrogenase activity GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000028s00003539.1	PF01565.18	FAD_binding_4	70	212	2.30E-24
Glyur000028s00003539.1	PF09265.5	Cytokin-bind	244	521	8.80E-119

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.269
SRR1783600	control	1.390
SRR1783602	moderate drought stress	0.848
SRR1811619	moderate drought stress	0.833

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.525
DRR006520	Root Summer glycyrrhizin high producing strain	0.693
DRR006521	Root Winter glycyrrhizin high producing strain	1.220
DRR006522	Root Winter glycyrrhizin high producing strain	1.087
DRR006523	Root Summer glycyrrhizin low producing strain	0.344
DRR006524	Root Summer glycyrrhizin low producing strain	0.341
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.505
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.496

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	6.326
SRR2868004	Drought Stress(Tissue:root)	5.472
SRR2967015	Control (Tissue:root)	1.362

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.744
SRR9715740	Leave	1.296
SRR9715741	Leave	0.930
SRR9715739	Root	0.066
SRR9715742	Root	0.539
SRR9715743	Root	0.254

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.926
SRR8749028	MeJA induced 9h	0.272
SRR8749029	MeJA induced 9h	0.273
SRR8749030	Uninduced	0.476
SRR8749031	Uninduced	0.366
SRR8749032	Uninduced	0.283

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.866
SRR8400027	Control-Root	2.047