Gene detail information of Glyur000028s00003541.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36360.2 | 0 | beta-galactosidase 3 |
| NR | KEH36209.1 | 0 | beta-galactosidase-like protein [Medicago truncatula] |
| COG | YP_003380010.1 | 2.00E-54 | beta-galactosidase [Kribbella flavida DSM 17836] |
| Swissprot | tr|Q9SCV9|BGAL3_ARATH | 0 | Beta-galactosidase 3 (Precursor) |
| trEMBL | tr|A0A072V2E3|A0A072V2E3_MEDTR | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 336410 | 341603 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000028s00003541.1 | PF01301.14 | Glyco_hydro_35 | 35 | 339 | 4.00E-121 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.573 |
| SRR1783600 | control | 3.536 |
| SRR1783602 | moderate drought stress | 2.692 |
| SRR1811619 | moderate drought stress | 2.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.079 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.986 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.739 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.716 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.062 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.362 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.186 |
| SRR2967015 | Control (Tissue:root) | 8.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.616 |
| SRR9715740 | Leave | 0.161 |
| SRR9715741 | Leave | 0.748 |
| SRR9715739 | Root | 3.232 |
| SRR9715742 | Root | 2.219 |
| SRR9715743 | Root | 3.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.506 |
| SRR8749028 | MeJA induced 9h | 0.190 |
| SRR8749029 | MeJA induced 9h | 0.411 |
| SRR8749030 | Uninduced | 0.058 |
| SRR8749031 | Uninduced | 0.256 |
| SRR8749032 | Uninduced | 0.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.844 |
| SRR8400027 | Control-Root | 15.262 |