Gene detail information of Glyur000028s00003554.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G75510.17.00E-93Transcription initiation factor IIF, beta subunit
NRXP_003527856.10PREDICTED: transcription initiation factor IIF subunit beta-like [Glycine max]
trEMBLtr|I1K7N0|I1K7N0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G03070.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00028401354405821-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03139TFIIF2, GTF2F2, TFG2 EC:3.6.4.12 Basal transcription factors map03022


Gene Ontology

biological_process

GO:0006366  transcription from RNA polymerase II promoter

GO:0006367  transcription initiation from RNA polymerase II promoter


cellular_component

GO:0005674  transcription factor TFIIF complex


molecular_function

GO:0003824  catalytic activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000028s00003554.1PF02270.10TFIIF_beta151042.10E-14
Glyur000028s00003554.1PF02270.10TFIIF_beta1042541.80E-45


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control45.358
SRR1783600control46.326
SRR1783602moderate drought stress68.638
SRR1811619moderate drought stress68.034

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain50.714
DRR006520Root Summer glycyrrhizin high producing strain50.192
DRR006521Root Winter glycyrrhizin high producing strain167.369
DRR006522Root Winter glycyrrhizin high producing strain163.143
DRR006523Root Summer glycyrrhizin low producing strain50.796
DRR006524Root Summer glycyrrhizin low producing strain50.562
DRR006525Leaf Summer glycyrrhizin high producing strain45.247
DRR006526Leaf Summer glycyrrhizin high producing strain45.698

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)64.929
SRR2868004Drought Stress(Tissue:root)75.159
SRR2967015Control (Tissue:root)76.619

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave52.473
SRR9715740Leave52.961
SRR9715741Leave57.060
SRR9715739Root7.636
SRR9715742Root29.916
SRR9715743Root24.421

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h126.920
SRR8749028MeJA induced 9h85.245
SRR8749029MeJA induced 9h120.546
SRR8749030Uninduced146.593
SRR8749031Uninduced106.352
SRR8749032Uninduced126.699

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root61.388
SRR8400027Control-Root58.189

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved