Gene detail information of Glyur000028s00003556.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75520.1 | 5.00E-58 | SHI-related sequence 5 |
| NR | XP_003523673.1 | 1.36E-114 | PREDICTED: protein SHI RELATED SEQUENCE 1-like [Glycine max] |
| Swissprot | tr|Q9LQZ5|SRS5_ARATH | 5.00E-75 | Protein SHI RELATED SEQUENCE 5 |
| trEMBL | tr|I1JT63|I1JT63_SOYBN | 5.00E-115 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G03000.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 419378 | 420972 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SRS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000028s00003556.1 | PF05142.7 | DUF702 | 109 | 260 | 6.20E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.381 |
| SRR1783600 | control | 1.280 |
| SRR1783602 | moderate drought stress | 3.136 |
| SRR1811619 | moderate drought stress | 3.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.138 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.217 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.172 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.219 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.458 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.335 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.350 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.047 |
| SRR2967015 | Control (Tissue:root) | 1.338 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.001 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.836 |
| SRR9715742 | Root | 2.102 |
| SRR9715743 | Root | 1.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.151 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.120 |
| SRR8749030 | Uninduced | 0.035 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.129 |
| SRR8400027 | Control-Root | 3.381 |