Gene detail information of Glyur000028s00003571.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G16310.10LSD1-like 3
NRKEH36227.10polyamine oxidase [Medicago truncatula]
COGYP_007109585.12.00E-56amine oxidase [Geitlerinema sp. PCC 7407]
Swissprottr|F4JLS1|LDL3_ARATH0Lysine-specific histone demethylase 1 homolog 3
trEMBLtr|A0A072V301|A0A072V301_MEDTR0Polyamine oxidase {ECO:0000313|EMBL:KEH36227.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00028523497531576-


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-SWI3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated

GO:0055114  oxidation-reduction process


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000028s00003571.1PF04433.12SWIRM6257121.20E-08
Glyur000028s00003571.1PF01593.19Amino_oxidase87213433.50E-99


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.664
SRR1783600control1.691
SRR1783602moderate drought stress2.652
SRR1811619moderate drought stress2.594

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.749
DRR006520Root Summer glycyrrhizin high producing strain2.818
DRR006521Root Winter glycyrrhizin high producing strain3.662
DRR006522Root Winter glycyrrhizin high producing strain3.719
DRR006523Root Summer glycyrrhizin low producing strain2.613
DRR006524Root Summer glycyrrhizin low producing strain2.592
DRR006525Leaf Summer glycyrrhizin high producing strain1.648
DRR006526Leaf Summer glycyrrhizin high producing strain1.642

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.924
SRR2868004Drought Stress(Tissue:root)6.662
SRR2967015Control (Tissue:root)6.287

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.540
SRR9715740Leave4.147
SRR9715741Leave4.043
SRR9715739Root0.535
SRR9715742Root5.348
SRR9715743Root4.910

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.531
SRR8749028MeJA induced 9h3.860
SRR8749029MeJA induced 9h1.145
SRR8749030Uninduced0.663
SRR8749031Uninduced0.804
SRR8749032Uninduced0.675

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.947
SRR8400027Control-Root5.800

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved