Gene detail information of Glyur000028s00003572.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29860.1 | 4.00E-123 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004500955.1 | 0 | PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Cicer arietinum] |
| COG | YP_001864889.1 | 2.00E-19 | hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q8H0T9|KTNB1_ARATH | 4.00E-07 | Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022} |
| trEMBL | tr|G7J4P6|G7J4P6_MEDTR | 0 | Guanine nucleotide-binding protein beta subunit-like protein {ECO:0000313|EMBL:AES73987.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00028 | 536046 | 543114 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000028s00003572.1 | PF00400.27 | WD40 | 8 | 45 | 1.00E-10 |
| Glyur000028s00003572.1 | PF00400.27 | WD40 | 62 | 91 | 0.004 |
| Glyur000028s00003572.1 | PF00400.27 | WD40 | 267 | 292 | 0.087 |
| Glyur000028s00003572.1 | PF00400.27 | WD40 | 297 | 334 | 7.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.622 |
| SRR1783600 | control | 8.047 |
| SRR1783602 | moderate drought stress | 7.932 |
| SRR1811619 | moderate drought stress | 7.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.789 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.783 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.154 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.139 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.092 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.816 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.686 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.465 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.774 |
| SRR2967015 | Control (Tissue:root) | 17.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.312 |
| SRR9715740 | Leave | 11.231 |
| SRR9715741 | Leave | 11.750 |
| SRR9715739 | Root | 3.703 |
| SRR9715742 | Root | 7.410 |
| SRR9715743 | Root | 6.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.037 |
| SRR8749028 | MeJA induced 9h | 14.250 |
| SRR8749029 | MeJA induced 9h | 15.099 |
| SRR8749030 | Uninduced | 15.001 |
| SRR8749031 | Uninduced | 14.468 |
| SRR8749032 | Uninduced | 15.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.634 |
| SRR8400027 | Control-Root | 12.152 |