Gene detail information of Glyur000029s00003578.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32460.1 | 4.00E-56 | myb domain protein 101 |
| NR | XP_003600125.1 | 0 | Transcription factor [Medicago truncatula] |
| Swissprot | tr|A2WW87|GAM1_ORYSI | 5.00E-65 | Transcription factor GAMYB |
| trEMBL | tr|G7IY34|G7IY34_MEDTR | 0 | Myb-like DNA-binding domain protein {ECO:0000313|EMBL:AES70376.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 5162 | 8108 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000029s00003578.1 | PF00249.26 | Myb_DNA-binding | 42 | 89 | 8.00E-16 |
| Glyur000029s00003578.1 | PF00249.26 | Myb_DNA-binding | 95 | 138 | 5.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.137 |
| SRR1783600 | control | 0.158 |
| SRR1783602 | moderate drought stress | 0.166 |
| SRR1811619 | moderate drought stress | 0.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.136 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.174 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.170 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.289 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.058 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.350 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.210 |
| SRR2967015 | Control (Tissue:root) | 0.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.021 |
| SRR9715740 | Leave | 0.096 |
| SRR9715741 | Leave | 0.137 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.093 |
| SRR9715743 | Root | 0.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.297 |
| SRR8749028 | MeJA induced 9h | 4.019 |
| SRR8749029 | MeJA induced 9h | 1.645 |
| SRR8749030 | Uninduced | 9.339 |
| SRR8749031 | Uninduced | 1.271 |
| SRR8749032 | Uninduced | 2.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.984 |
| SRR8400027 | Control-Root | 0.688 |