Gene detail information of Glyur000029s00003591.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G20395.1 | 5.00E-17 | RING/U-box superfamily protein |
| NR | KHN02835.1 | 2.11E-91 | NEP1-interacting protein-like 1 [Glycine soja] |
| Swissprot | tr|Q8GT75|NIP1_ARATH | 1.00E-23 | NEP1-interacting protein 1 |
| trEMBL | tr|K7MQW6|K7MQW6_SOYBN | 9.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G11051.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 73311 | 75610 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000029s00003591.1 | PF13639.1 | zf-RING_2 | 221 | 263 | 3.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.185 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.229 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.462 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.166 |
| SRR2967015 | Control (Tissue:root) | 0.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.181 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.002 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.341 |
| SRR8749028 | MeJA induced 9h | 52.471 |
| SRR8749029 | MeJA induced 9h | 14.490 |
| SRR8749030 | Uninduced | 22.059 |
| SRR8749031 | Uninduced | 3.954 |
| SRR8749032 | Uninduced | 5.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.166 |
| SRR8400027 | Control-Root | 0.209 |