Gene detail information of Glyur000029s00003617.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G27070.10tryptophan synthase beta-subunit 2
NRXP_003600046.10Tryptophan synthase beta chain [Medicago truncatula]
COGYP_007108541.10tryptophan synthase subunit beta [Geitlerinema sp. PCC 7407]
Swissprottr|O50046|TRPB_CAMAC0Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBLtr|G7IXJ6|G7IXJ6_MEDTR0Tryptophan synthase beta type 2 {ECO:0000313|EMBL:AES70297.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00029200246202696-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01696trpB EC:4.2.1.20 Biosynthesis of amino acids map01230
Glycine, serine and threonine metabolismmap00260
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0000162  tryptophan biosynthetic process

GO:0006568  tryptophan metabolic process


molecular_function

GO:0004834  tryptophan synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000029s00003617.1PF00291.20PALP1054182.60E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.242
SRR1783600control5.255
SRR1783602moderate drought stress4.241
SRR1811619moderate drought stress4.095

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.834
DRR006520Root Summer glycyrrhizin high producing strain9.478
DRR006521Root Winter glycyrrhizin high producing strain6.286
DRR006522Root Winter glycyrrhizin high producing strain5.962
DRR006523Root Summer glycyrrhizin low producing strain4.574
DRR006524Root Summer glycyrrhizin low producing strain4.596
DRR006525Leaf Summer glycyrrhizin high producing strain4.643
DRR006526Leaf Summer glycyrrhizin high producing strain4.264

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.776
SRR2868004Drought Stress(Tissue:root)8.981
SRR2967015Control (Tissue:root)10.097

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.629
SRR9715740Leave7.203
SRR9715741Leave6.498
SRR9715739Root6.118
SRR9715742Root6.932
SRR9715743Root7.712

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.427
SRR8749028MeJA induced 9h11.270
SRR8749029MeJA induced 9h7.084
SRR8749030Uninduced4.955
SRR8749031Uninduced2.426
SRR8749032Uninduced2.808

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.559
SRR8400027Control-Root14.411

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved