Gene detail information of Glyur000029s00003626.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G50840.10polymerase gamma 2
NRXP_004500139.10PREDICTED: uncharacterized protein LOC101510274 [Cicer arietinum]
COGYP_004626539.14.00E-50DNA polymerase I [Thermodesulfatator indicus DSM 15286]
Swissprottr|F4I6M1|POLIA_ARATH0DNA polymerase I A, chloroplastic/mitochondrial (Precursor)
trEMBLtr|G7J1V4|G7J1V4_MEDTR0PolI-like B DNA polymerase {ECO:0000313|EMBL:AES70238.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00029262119271398+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02335DPO1, polA EC:2.7.7.7 Purine metabolism map00230
Pyrimidine metabolismmap00240
DNA replicationmap03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Homologous recombinationmap03440


Gene Ontology

biological_process

GO:0006139  nucleobase-containing compound metabolic process

GO:0006260  DNA replication

GO:0006261  DNA-dependent DNA replication


molecular_function

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0003887  DNA-directed DNA polymerase activity

GO:0008408  3'-5' exonuclease activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000029s00003626.1PF01612.15DNA_pol_A_exo13465248.10E-10
Glyur000029s00003626.1PF00476.15DNA_pol_A74610802.20E-57


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.651
SRR1783600control6.624
SRR1783602moderate drought stress8.110
SRR1811619moderate drought stress7.846

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.290
DRR006520Root Summer glycyrrhizin high producing strain8.950
DRR006521Root Winter glycyrrhizin high producing strain2.916
DRR006522Root Winter glycyrrhizin high producing strain2.812
DRR006523Root Summer glycyrrhizin low producing strain13.267
DRR006524Root Summer glycyrrhizin low producing strain12.983
DRR006525Leaf Summer glycyrrhizin high producing strain4.325
DRR006526Leaf Summer glycyrrhizin high producing strain4.264

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.545
SRR2868004Drought Stress(Tissue:root)11.329
SRR2967015Control (Tissue:root)14.441

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.128
SRR9715740Leave9.517
SRR9715741Leave7.592
SRR9715739Root2.393
SRR9715742Root12.956
SRR9715743Root11.146

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.667
SRR8749028MeJA induced 9h5.728
SRR8749029MeJA induced 9h1.787
SRR8749030Uninduced0.563
SRR8749031Uninduced0.075
SRR8749032Uninduced0.118

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.791
SRR8400027Control-Root15.709

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved