Gene detail

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Gene detail information of Glyur000029s00003632.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20480.1	8.00E-20	tetraacyldisaccharide 4'-kinase family protein
NR	XP_003532133.2	4.43E-52	PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial-like isoform X1 [Glycine max]
Swissprot	tr\|Q8LEA0\|LPXK_ARATH	1.00E-22	Probable tetraacyldisaccharide 4'-kinase, mitochondrial (Precursor)
trEMBL	tr\|I1KYA1\|I1KYA1_SOYBN	2.00E-52	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G43060.1}

Sequence

Transcript Sequence

>Glyur000029s00003632.1
ACTACTACTGCTATCAGAGTGCGGTGAACGGCCAATATGATACAAAAAAGGAGAAGGGAAAAACAATGAGTTGATGGAGAAATTGAGAAGAGTGGTGAATGAGATAGCGTATGNGGAGAATCCCCGTAAGCTATCTCCACTTCACCGCTCTCTGCTCCCTTTCCTTTCCATTGCNTCTGCTCTCTATAAACTCGCTCTCTCACTTCGCCACTCCCTTTACCGACACCGCTTCTTTCAAATCCACCGTTTGCCAGTTCCTGTTATCAGCGTCGGGAATTTGACATGGGGAGGCAANGGGAAGACACCCATGGTGGAGTTCATCGCTCTCTGCTTNGCTCGTTCCGGAATTTCACCCCTCCTTCTCTCTCGGGGTTATGGCGGCGGCGATGAAGTTAACATGCTTCGAAGGCATTTACTTGGAACACCAAACAAGTTTGGTGTTGGCCCCAAATCGAGCTGCTGTTGCAAATCAATTTATCCAAAAATATGGCTACATTGATATTCGCAAGAGTTCATGGTATGAGAAACAAAACCGTGATGGGAAGGTCCAGAATTCTCTCGATTCAGAAAAAAGTTGGGGTTGTAGTTCTTGATGATGCAATGCAGATGGGAGCGCTTTATGTTGATCGAATAGATTTCAGTGATCATCACATATTGCATTCCAGGGATATTGATATGATCAGAGCCAGACTTGGAGAACTAGAGGGGAAGTTCGGTTCCAAACCAATTGTTGTAATAACTGAAAAGGATTATGATAGGGACCCAGAGATTCTCAAGCAATTATTTCCATTTAAAGTTTATGTTCTCTGTTCTACACTGAAGNTTTTGCCTTACAGAGGAAGCATGGAGGATAGCTTTAAGAAATTTCTGAAGGACCAATTGAAATTAGAATTGCCTCCTCCAATGTGTTACTGAAAAACTGTGTTGTATACATGTACAGCAGCAGAAATCAATGAATTTATGAAACCTTTCGCTGCATAATCTCATTTTTCTTCTATTATGTTTTATTATTTCAGTTCTTTATATGCCAGAC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	292557	294995	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00912	lpxK	EC:2.7.1.130	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

biological_process
GO:0009245 lipid A biosynthetic process

molecular_function GO:0005524 ATP binding GO:0009029 tetraacyldisaccharide 4'-kinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003632.1	PF02606.9	LpxK	41	132	3.80E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.225
SRR1783600	control	3.302
SRR1783602	moderate drought stress	3.204
SRR1811619	moderate drought stress	3.187

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.214
DRR006520	Root Summer glycyrrhizin high producing strain	6.254
DRR006521	Root Winter glycyrrhizin high producing strain	4.876
DRR006522	Root Winter glycyrrhizin high producing strain	4.508
DRR006523	Root Summer glycyrrhizin low producing strain	3.313
DRR006524	Root Summer glycyrrhizin low producing strain	2.682
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.622
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.134

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	8.857
SRR2868004	Drought Stress(Tissue:root)	7.793
SRR2967015	Control (Tissue:root)	7.799

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.409
SRR9715740	Leave	3.721
SRR9715741	Leave	1.686
SRR9715739	Root	0.858
SRR9715742	Root	0.815
SRR9715743	Root	0.793

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.365
SRR8749028	MeJA induced 9h	3.985
SRR8749029	MeJA induced 9h	2.139
SRR8749030	Uninduced	3.171
SRR8749031	Uninduced	1.781
SRR8749032	Uninduced	0.882

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.572
SRR8400027	Control-Root	3.272