Gene detail information of Glyur000029s00003637.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G27070.10tryptophan synthase beta-subunit 2
NRXP_004500038.10PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cicer arietinum]
COGYP_007108541.10tryptophan synthase subunit beta [Geitlerinema sp. PCC 7407]
Swissprottr|P25269|TRBP2_ARATH0Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBLtr|I1N0T6|I1N0T6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G12090.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00029310525313848+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01696trpB EC:4.2.1.20 Biosynthesis of amino acids map01230
Glycine, serine and threonine metabolismmap00260
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0000162  tryptophan biosynthetic process

GO:0006568  tryptophan metabolic process


molecular_function

GO:0004834  tryptophan synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000029s00003637.1PF00291.20PALP1494603.60E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.273
SRR1783600control28.515
SRR1783602moderate drought stress16.837
SRR1811619moderate drought stress16.746

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.480
DRR006520Root Summer glycyrrhizin high producing strain25.334
DRR006521Root Winter glycyrrhizin high producing strain48.608
DRR006522Root Winter glycyrrhizin high producing strain46.975
DRR006523Root Summer glycyrrhizin low producing strain16.757
DRR006524Root Summer glycyrrhizin low producing strain16.751
DRR006525Leaf Summer glycyrrhizin high producing strain22.103
DRR006526Leaf Summer glycyrrhizin high producing strain21.790

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)57.195
SRR2868004Drought Stress(Tissue:root)42.008
SRR2967015Control (Tissue:root)40.084

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave37.978
SRR9715740Leave30.191
SRR9715741Leave25.021
SRR9715739Root15.258
SRR9715742Root12.489
SRR9715743Root14.548

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h31.726
SRR8749028MeJA induced 9h32.699
SRR8749029MeJA induced 9h28.444
SRR8749030Uninduced21.084
SRR8749031Uninduced12.802
SRR8749032Uninduced11.139

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.237
SRR8400027Control-Root50.937

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved