Gene detail information of Glyur000029s00003643.4 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19070.1 | 1.00E-85 | spermidine hydroxycinnamoyl transferase |
| NR | XP_003599037.1 | 0 | Anthranilate N-benzoyltransferase protein [Medicago truncatula] |
| Swissprot | tr|O64470|SHT_ARATH | 1.00E-101 | Spermidine hydroxycinnamoyl transferase |
| trEMBL | tr|G7J1R6|G7J1R6_MEDTR | 0 | Spermidine hydroxycinnamoyl transferase {ECO:0000313|EMBL:AES69288.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00029 | 354556 | 361977 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13065 | E2.3.1.133, HCT | EC:2.3.1.133 | Phenylpropanoid biosynthesis | map00940 |
| Stilbenoid, diarylheptanoid and gingerol biosynthesis | map00945 | |||
| Flavonoid biosynthesis | map00941 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000029s00003643.4 | PF02458.10 | Transferase | 32 | 482 | 1.20E-99 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.111 |
| SRR1783600 | control | 4.043 |
| SRR1783602 | moderate drought stress | 6.045 |
| SRR1811619 | moderate drought stress | 6.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.264 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.043 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.442 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.303 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.053 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.944 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 63.119 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 62.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.312 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.555 |
| SRR2967015 | Control (Tissue:root) | 3.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 87.123 |
| SRR9715740 | Leave | 139.256 |
| SRR9715741 | Leave | 28.109 |
| SRR9715739 | Root | 1.174 |
| SRR9715742 | Root | 0.965 |
| SRR9715743 | Root | 0.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.666 |
| SRR8749028 | MeJA induced 9h | 3.619 |
| SRR8749029 | MeJA induced 9h | 1.559 |
| SRR8749030 | Uninduced | 3.428 |
| SRR8749031 | Uninduced | 1.940 |
| SRR8749032 | Uninduced | 2.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.276 |
| SRR8400027 | Control-Root | 3.320 |