Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000029s00003647.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42790.1	0	citrate synthase 3
NR	XP_003599916.1	0	Citrate synthase [Medicago truncatula]
COG	YP_004571612.1	9.00E-170	citrate synthase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|P49299\|CYSZ_CUCMA	0	Citrate synthase, glyoxysomal (Precursor)
trEMBL	tr\|G7IZY5\|G7IZY5_MEDTR	0	Citrate synthase {ECO:0000256\|PIRNR:PIRNR001369}

Sequence

Transcript Sequence

>Glyur000029s00003647.1
GGAATGGAATGAAATGAATGATTTTCGGAAAGCTAATAGAATAAGAACACGTTTCGTGAAAAAAAAAAAGAAAGCAATAAGAACACGTGAAATGAATCTCTCTCCAACTCCAAATTCCAATTAGCAGCTCGTTTTTTTGCACATTCCATACGATCCGATCAGATCCCTTTTTCTCGAATCCTACAACTAAAGGAAGAAGCAGAATCACACACAACACAACACAACACGATTCACAATTTCACAACACAAACTTTGCAATTGCATGATGTCGTCAACAACAACAACAACTACAACTTCCGAATCATCACGGGTGCACGATGCTGCACGCAACCGTTTGGCCACCCTCACTGCTCACTTGCTCCCCTCCGCCGCCGCCAACGCCACCGCGCTCCTCCACCCTCTCAGCCTCTCCGCCCCCGCCGGGATCTCGCCGCCCCCGAACGTCAAGGGCACCCTCACCGTCGTCGATGACCGGACCGGCAAGAAGTACAGCATCGAGGTCTCTCCCGAAGGCACCGTCAAAGCCAACGACTTCAAGAAGATATCAACTGGGAAGAATGACAAGGGACTCAAACTTTATGACCCTGGCTATTTGAACACTGCTCCTGTCCGATCAACAATTTCATATATTGATGGGGATGAGGGAATCCTTAGATATAGGGGATACCCGATTGAGGAGTTGGCGGAGAAAAGCACCTTTATGGAAGTGTCATACCTCACACTGTACGGAAATTTGCCTTCTGAAAGTCAGTTAGCAGACTGGGAGTTTGCTGTATCTCAGCATTCAGCTGTACCACAAGGAGTTTTGGATATCATACAATCAATGCCCCAGGATGCACATCCTATGGGCATGCTCGTTAATGCTTTAAGTGCTTTATCTGTTTTTCATCCCGATGCAAATCCTGCTCTCAGAGGTCTTGATATCTACAACTCAAAGCAAGTGAGAGACAAACAAATAGCACGGATTATTGGAAAGATAACAACAATTGCTGCTGCAATTAATCTTAGAAGGGCAGGAAGGCCACCTGTGCTTCCATCCAACAAACTTTCTTACACAGAGAACTTCCTCTACATGCTAGATTCTTTCATAGAGTATAACTCAACTAAAATCTCCATTATGCATGTTTTCAGGGGCAATCGGTCATATAAACCTAATCCTCGTCTAACTCGTGCACTGGACATTATCTTCATCCTGCACGCAGAACATGAAATGAATTGCTCTACATCCACTGTACGTCACCTTGCATCAAGCGGTGTTGATGTGTACACTGCTATTGCTGGGGCAGTTGGAGCTCTATATGGACCTCTTCATGGTGGAGCTAATGAGGCTGTCCTCAAAATGCTGAGTGAAATTGGAAGTGTTGATAACATTCCAGAGTTCATTGAGGGTGTTAAAGCCAGGAAACGAAAGCTCAGTGGTTTTGGACATCGTGTGTACAAAAACTATGATCCTAGAGCAAAGGTCTTAAGAAAACTGACGGAGGAAGTATTTTCCATTGTTGGCAGGGATCCTCTTATAGAGGTTGCAGTTGCCTTGGAGAAGATTGCACTGTCTGATGAGTATTTCATCAAGAGGAAGCTGTATCCAAATGTTGACTTCTACTCTGGATTAATATATAGGGCTATGGGGTTTCCACCCGAGTATTTCACCGTTTTATTTGCTATCCCTCGTATGGCTGGATACTTGGCACATTGGCGTGAGTCCTTGGATGATCCCGATACAAAGATTATGAGGCCTCAACAGGTTTATATTGGGGAATGGCTGCGGCATTATACACCGATCAAAGAAAGAACTGTATCAAGTAACACTGACAAGCTTGGTCAGTTGGCTGATGAGGCAAGGAAACTTCCTTTAGGAGCATGTCATTGCATGAATAATGCAACTGGTGTCATAACCTTCTACCAGAATGATGATAGTGGGGTTTGCAGTTCCAGGCTTCCAGCCTTCAACTATGCAAAGTAGTACATGTGCCAGAAGTTCTGCAGCTACTTTCAATTAATGGAACTTGACATGTATGAAAATAAAAAATCCTAAGGAATACTTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	391605	396632	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01647	CS, gltA	EC:2.3.3.1	Carbon metabolism	map01200
			2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Citrate cycle (TCA cycle)	map00020
			Glyoxylate and dicarboxylate metabolism	map00630

------

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003647.1	PF00285.16	Citrate_synt	109	492	1.30E-125

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.380
SRR1783600	control	46.657
SRR1783602	moderate drought stress	41.764
SRR1811619	moderate drought stress	41.932

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	71.331
DRR006520	Root Summer glycyrrhizin high producing strain	70.828
DRR006521	Root Winter glycyrrhizin high producing strain	41.376
DRR006522	Root Winter glycyrrhizin high producing strain	40.168
DRR006523	Root Summer glycyrrhizin low producing strain	44.365
DRR006524	Root Summer glycyrrhizin low producing strain	46.054
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.776
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.825

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	67.215
SRR2868004	Drought Stress(Tissue:root)	61.551
SRR2967015	Control (Tissue:root)	61.672

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	37.020
SRR9715740	Leave	28.610
SRR9715741	Leave	40.321
SRR9715739	Root	16.361
SRR9715742	Root	56.003
SRR9715743	Root	54.122

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.098
SRR8749028	MeJA induced 9h	42.082
SRR8749029	MeJA induced 9h	22.094
SRR8749030	Uninduced	33.705
SRR8749031	Uninduced	32.329
SRR8749032	Uninduced	21.231

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	81.402
SRR8400027	Control-Root	75.089