Gene detail

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Gene detail information of Glyur000029s00003670.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78570.1	0	rhamnose biosynthesis 1
NR	KHN18103.1	0	Putative rhamnose biosynthetic enzyme 1 [Glycine soja]
COG	YP_006370589.1	6.00E-85	dtdp-glucose 4,6-dehydratase [Tistrella mobilis KA081020-065]
Swissprot	tr\|Q9SYM5\|RHM1_ARATH	0	UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase {ECO:0000305\|PubMed:17190829}
trEMBL	tr\|K7MR59\|K7MR59_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G12660.2}

Sequence

Transcript Sequence

>Glyur000029s00003670.1
TTTGGTTTGGGAGATGGGAATGAGTTTTGTTCTAAAGTTCTTAGGAATTTTTTGGTGACAAGATTCAATATTTTATTCAAACTTGTGATATATATATGTGTGTTTGTGACTATAATTAAGTTGTATTGCTTTACACAAAAGTTGTGCAGACATGGCTAGCACCTATAAGCCAAAGAACATTCTTNTTACTGGAGCAGCTGGCTTCATAGCTTCCCATGTATGCAACAGGCTAGTCCATAACTACCCTGATTACAATATCTTTGTGCTTGACAAGCTTGATTACTGTTCAAATGTAAAGAACCTTATTCCCTCACATTCATCTTCCAATTTCAAGTTCATCAAGGGAGACATTGCAAGTGCTGATTTGGTCAACTACATCATTCTCATTGAATCTATTGATACCATAATGCACTTTGCAGCTCAGACCCATGTTGACAANTCTTTTGGCAACAGCTTTGAGTTCACCAAAAACAACATTTATGGAACACATGTCCTTCTAGAAGCCTGCAAAGTCTTTGGGGATCAAGTGAAGAGGTTCATCCATGTCAGCACAGATGAAGTTTATGGGGAGACAGATGAGGATGCAGTGGTAGGAAACCATGAGGCTTCTCAACTCCTCCCTACCAACCCATATTCAGCAACAAAAGCTGGTGCAGAAATGCTTGTGATGGCCTATGGAAGATCATATGGATTGCCAGTTATAACCACAAGAGGGAACAATGTTTATGGGCCTAATCAATTCCCTGAGAAGCTGATTCCAAAGTTTTTACTTTTGGCCATGAAAGGAAGAACTCTCCCAATTCATGGGGATGGGTCTAATGTTAGGAGTTATCTCTATTGTGAAGATGTTGCTGAAGCTTTTGAGATCATTCTCCATAGAGGTGAGATAGGACATGTCTATAACATTGGGACAAAGAAAGAAAGGAGTGTGATTGATGTGGCTAAGGACATATGTAGGCTTTTCTCATTGGATCCAGAGAAACATGTTAAGTTTGTGGAGAATAGGCCTTTCAATGATCAAAGATACTTCTTGGATGATCAGAAGCTGAAGAATNTGGGATGGTCTGAGAGCACTACTTGGGAGGAAGGTCTAAGGAAGACAATGGATTGGTATGTTAAGAATCTTNATTGGTGGGGTGATGTTTCTGGTGCTCTGCTTCCCCATCCAAGAATGCTTACCATGCCAGGAGTTGAGAAATACTATGATGGCTCAAATGTAAAAAATGCTAATCAGAACAAAATGGTGGTTCCAACTATAATGAACAATCCATCACCACATAAGCCTTCATTGAAGTTCTTGATATATGGTGGTACAGGGTGGATTGGGGGGCTTCTTGGGAATATTTGTGAGAAGCAAGGGATACCCTTTGAATATGGTACAAGACGTTTTGATGATAGATCACAGCTCTTGGTTGACATTAGGNCCATTAAACCAACTCATGTGTTCAATGCTTCTGGTGTGATTGGTGCATTAAATGTGAAATGTTTTGAAGCTCATAAACCAGAAATAATGCGTACCACTGTTGTTAGTGTGTTAACATTGGCAGATGTATGTAGAGAGCATGGTCTCCCCTTGATGAATTATACCTTTGGTGGGGGTAACATTGAAGACAAAACAAATTCTACTAATTCTCTCTATTTTAAAACCCAAGCCAAGGTTGAAGAGTTGCTAAAGGAATATGAAAATGTATGCACCTTCAGAATGCAGTTGCCAGTATCCTCTGACCTCAGCAATCCGCGTAACTTCATAACAAAGATAATAAGGTCTGATAAAGTGGCTAACATTACAAACAACATAACTGTTTTGGATGAACTTCTTCCTATTTCAGTTGAGATGGCCAAAAGAAATGCTAGGGGCATTTGGGACATCACAAATCCTGGTAATGTGACCTGCAATGAGATTCTTGAGATGTACAAGAATTATGTTGACCCTAGTTTTAAGTGGGTTAATCTTATACTTGAGCAACAGTCTCGGTTATCTTCTCCAAGCATTAACCACATTGATGCATCAAAACTGAAGAAGGAATTTCCTGAGTTGTTACCTGTCAAGGACTCATTGATTAAATATGTATTTGAACCAAAAAAGAAAAGCTTGGGTTATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00029	525578	527791	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12450	RHM	EC:4.2.1.76	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0009225 nucleotide-sugar metabolic process

molecular_function GO:0003824 catalytic activity GO:0008460 dTDP-glucose 4,6-dehydratase activity GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000029s00003670.1	PF01370.16	Epimerase	10	253	1.70E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.739
SRR1783600	control	0.716
SRR1783602	moderate drought stress	1.563
SRR1811619	moderate drought stress	1.544

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.103
DRR006520	Root Summer glycyrrhizin high producing strain	0.102
DRR006521	Root Winter glycyrrhizin high producing strain	13.205
DRR006522	Root Winter glycyrrhizin high producing strain	12.632
DRR006523	Root Summer glycyrrhizin low producing strain	2.403
DRR006524	Root Summer glycyrrhizin low producing strain	2.166
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.533
SRR2868004	Drought Stress(Tissue:root)	1.062
SRR2967015	Control (Tissue:root)	0.886

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.285
SRR9715740	Leave	0.030
SRR9715741	Leave	0.094
SRR9715739	Root	0.071
SRR9715742	Root	0.156
SRR9715743	Root	0.227

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.701
SRR8749028	MeJA induced 9h	6.209
SRR8749029	MeJA induced 9h	2.719
SRR8749030	Uninduced	5.127
SRR8749031	Uninduced	1.399
SRR8749032	Uninduced	2.443

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.752
SRR8400027	Control-Root	0.169