Gene detail information of Glyur000030s00002298.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G49900.10Beta-glucosidase, GBA2 type family protein
NRKEH32758.10Non-lysosomal glucosylceramidase [Medicago truncatula]
COGYP_590763.16.00E-133hypothetical protein Acid345_1688 [Candidatus Koribacter versatilis Ellin345]
trEMBLtr|A0A072UUL4|A0A072UUL4_MEDTR0Non-lysosomal glucosylceramidase {ECO:0000256|PIRNR:PIRNR028944}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000307770988345+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH116


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K17108GBA2 EC:3.2.1.45 Sphingolipid metabolism map00600
Other glycan degradationmap00511


Gene Ontology

biological_process

GO:0006665  sphingolipid metabolic process

GO:0006680  glucosylceramide catabolic process


cellular_component

GO:0016020  membrane

GO:0016021  integral component of membrane


molecular_function

GO:0003824  catalytic activity

GO:0004348  glucosylceramidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000030s00002298.3PF12215.3GBA2_N1243803.60E-53
Glyur000030s00002298.3PF04685.8DUF6085018636.80E-150


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.296
SRR1783600control5.241
SRR1783602moderate drought stress6.338
SRR1811619moderate drought stress6.344

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.150
DRR006520Root Summer glycyrrhizin high producing strain3.140
DRR006521Root Winter glycyrrhizin high producing strain1.126
DRR006522Root Winter glycyrrhizin high producing strain1.151
DRR006523Root Summer glycyrrhizin low producing strain2.631
DRR006524Root Summer glycyrrhizin low producing strain2.574
DRR006525Leaf Summer glycyrrhizin high producing strain8.707
DRR006526Leaf Summer glycyrrhizin high producing strain8.574

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.804
SRR2868004Drought Stress(Tissue:root)65.453
SRR2967015Control (Tissue:root)52.978

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.727
SRR9715740Leave26.010
SRR9715741Leave35.041
SRR9715739Root2.703
SRR9715742Root7.333
SRR9715743Root6.361

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.516
SRR8749028MeJA induced 9h35.144
SRR8749029MeJA induced 9h17.521
SRR8749030Uninduced55.593
SRR8749031Uninduced75.479
SRR8749032Uninduced40.238

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.436
SRR8400027Control-Root24.583

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved