Gene detail information of Glyur000030s00002324.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06240.1 | 1.00E-18 | F-box family protein |
| NR | XP_004499391.1 | 1.48E-179 | PREDICTED: F-box protein At3g07870-like [Cicer arietinum] |
| Swissprot | tr|Q9SFC7|FB135_ARATH | 3.00E-19 | F-box protein At3g07870 |
| trEMBL | tr|A0A072UTS1|A0A072UTS1_MEDTR | 8.00E-153 | F-box protein interaction domain protein {ECO:0000313|EMBL:KEH32741.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00030 | 215878 | 217251 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000030s00002324.1 | PF00646.28 | F-box | 21 | 62 | 6.40E-08 |
| Glyur000030s00002324.1 | PF07734.8 | FBA_1 | 263 | 421 | 4.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.163 |
| SRR1783600 | control | 11.286 |
| SRR1783602 | moderate drought stress | 19.240 |
| SRR1811619 | moderate drought stress | 19.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.611 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.941 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.626 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.080 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.118 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.308 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.395 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.720 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.998 |
| SRR2967015 | Control (Tissue:root) | 21.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.692 |
| SRR9715740 | Leave | 4.970 |
| SRR9715741 | Leave | 4.554 |
| SRR9715739 | Root | 11.889 |
| SRR9715742 | Root | 7.442 |
| SRR9715743 | Root | 6.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.217 |
| SRR8749028 | MeJA induced 9h | 10.257 |
| SRR8749029 | MeJA induced 9h | 4.409 |
| SRR8749030 | Uninduced | 2.634 |
| SRR8749031 | Uninduced | 6.144 |
| SRR8749032 | Uninduced | 8.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.381 |
| SRR8400027 | Control-Root | 9.195 |