Gene detail information of Glyur000030s00002328.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G02500.17.00E-58Nucleotide-diphospho-sugar transferases superfamily protein
NRXP_004499358.11.33E-106PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like [Cicer arietinum]
COGYP_004651001.11.00E-452-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Parachlamydia acanthamoebae UV-7]
Swissprottr|P69834|ISPD_ARATH9.00E-782-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic (Precursor)
trEMBLtr|I3S1B8|I3S1B8_LOTJA1.00E-105Uncharacterized protein {ECO:0000313|EMBL:AFK34060.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00030219755224657+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00991ispD EC:2.7.7.60 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0050518  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000030s00002328.2PF01128.14IspD351944.00E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.185
SRR1783600control13.424
SRR1783602moderate drought stress11.752
SRR1811619moderate drought stress10.984

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.312
DRR006520Root Summer glycyrrhizin high producing strain19.241
DRR006521Root Winter glycyrrhizin high producing strain14.251
DRR006522Root Winter glycyrrhizin high producing strain13.518
DRR006523Root Summer glycyrrhizin low producing strain12.956
DRR006524Root Summer glycyrrhizin low producing strain15.195
DRR006525Leaf Summer glycyrrhizin high producing strain33.524
DRR006526Leaf Summer glycyrrhizin high producing strain33.748

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)42.852
SRR2868004Drought Stress(Tissue:root)49.471
SRR2967015Control (Tissue:root)44.336

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave39.202
SRR9715740Leave56.691
SRR9715741Leave40.725
SRR9715739Root11.852
SRR9715742Root17.149
SRR9715743Root15.404

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.204
SRR8749028MeJA induced 9h21.498
SRR8749029MeJA induced 9h17.224
SRR8749030Uninduced24.718
SRR8749031Uninduced27.561
SRR8749032Uninduced25.499

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root52.581
SRR8400027Control-Root48.935

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved