Gene detail information of Glyur000030s00002330.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02470.1 | 3.00E-101 | alfin-like 6 |
| NR | XP_006600266.1 | 3.62E-156 | PREDICTED: PHD finger protein Alfin1-like [Glycine max] |
| Swissprot | tr|Q40359|ALFIN_MEDSA | 8.00E-145 | PHD finger protein Alfin1 |
| trEMBL | tr|I1MQU2|I1MQU2_SOYBN | 1.00E-156 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G00630.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00030 | 234999 | 242124 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Alfin-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000030s00002330.1 | PF12165.3 | DUF3594 | 10 | 142 | 7.00E-82 |
| Glyur000030s00002330.1 | PF00628.24 | PHD | 199 | 248 | 5.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.529 |
| SRR1783600 | control | 22.655 |
| SRR1783602 | moderate drought stress | 22.693 |
| SRR1811619 | moderate drought stress | 22.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.967 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.542 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.623 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.870 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.127 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.124 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.380 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 48.790 |
| SRR2868004 | Drought Stress(Tissue:root) | 48.908 |
| SRR2967015 | Control (Tissue:root) | 47.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 36.900 |
| SRR9715740 | Leave | 42.892 |
| SRR9715741 | Leave | 43.914 |
| SRR9715739 | Root | 7.831 |
| SRR9715742 | Root | 19.964 |
| SRR9715743 | Root | 17.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.626 |
| SRR8749028 | MeJA induced 9h | 21.388 |
| SRR8749029 | MeJA induced 9h | 21.810 |
| SRR8749030 | Uninduced | 22.505 |
| SRR8749031 | Uninduced | 21.101 |
| SRR8749032 | Uninduced | 15.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 41.460 |
| SRR8400027 | Control-Root | 41.821 |