Gene detail

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Gene detail information of Glyur000030s00002344.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49760.1	0	Leucine-rich repeat protein kinase family protein
NR	KHN40213.1	0	Putative leucine-rich repeat receptor-like protein kinase [Glycine soja]
COG	YP_004775215.1	2.00E-39	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LT96\|Y5977_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|K7L424\|K7L424_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G40110.2}

Sequence

Transcript Sequence

>Glyur000030s00002344.1
GTATGAAGTGGTGTGTGTGGATTTGGAGGAAGGTGGATAAGAAAGAAAGGATTTTTGTTATAGTCGACACAGTATCGGAGTGGTGAGGTTTGTTTTGAGAGCTAGTTTAGTAAGTTGATCATAATGAGTGAGAGAATATTAGTAGTTCTGCTGCTGCTTGCTTTTAAGTATTTGTTAGTTGCAGAAGGAGAAACAGCTAATGAGGATTTGGCCACACTGAAGTCTCTTATGGATACCTGGAAGGACACCCCTCCTAGTTGGGTGGGTTCAGATCCNTGTGGTGATGCTTGGGAAGGAATTAAGTGCAAGAATTCACGTGTTACATCCATAACATTATCAAGCACTGGTTTGGGAGGCCAACTTTCTGGAGATATTGGATCACTCTCTGAATTGGAGACGTTGGATCTATCTTACAACAAGGACTTGAATGGACCGCTTCCAAAGTCNATTGGAGAGCTGAAGAAGCTATCAACCTTAATTCTTGTTGGTTGTAGCTTCAGTGGTCCTATTCCTGACACCATAGGATATCTCCAGGAGCTTCGATACTTATCTTTGAATTCCAACGGCTTTAGTGGACAAATTCCGCATTCAATTGGTAATTTGTCAAAGCTTTATTGGTTAGATTTAGCTGACAATCAGCTTGAAGGGCCCATCCCAGTATCTAATAGCAGCAGCAGCTCTGGTCTTGATCAGTTACTCCATGCGAAGCATTTTCATCTTGGGAAGAATAAACTATCTGGCAACATTCCTCCTCATATCTTTAGCCGCGAAATGTCTCTGATTCATTTGCTTTTGGAAAGCAATCAACTCACTGGCAGCATTCCATCTACGCTTGGACAAGTTCCGAATCTGGAGGTGGTGCGCTTGGATAGTAATTTATTAACTGGACCTGTACCTCCAAACATCAACAATCTTACGTATGTTCAAGATCTGTACTTGTCCAACAATAAACTGTCAGGCTCCCTGCCAAACCTTGCTGGAATGAGAGTCCTCAGCTACCTGGACATGAGCAACAATAGCTTTAAGCCAATAGATTTTCCGCCATGGNTTTCGACTCTCGAGTCTTTAACAACATTAAAGATGGAGAGAACACAACTTCAAGGACAGGTTCCAANTTCATTGTTTAGTCTCTCCAGTTTACAGACTGTGGTGCTAAAAGACAACAANATAAATGGAACCTTGGATGTTGGCTCCACCTACAGCAACCAGCTGCGACTCATTGATTTGGAAAACAATTTAATTGACANCTTCAAGCAAAAAGATGGAGTTTCAAATGTCAATATAATACTCAAAGATAACCCAATTTGTGAAGAAGGTGGAGCAGTAGGAAACTACTGCTCTATTATTCAACCTGAAGTTTCATATACAACACCAACAAATAACTGCCAGCCTGGTACCTGCAGTTCAGAACAGGTTCCTAGCCCCAACTGTATATGTGCATATCCATATACGGGAACCTTAACTTTCAGATCACCTTCCTTTTCCGACCTAGATAACAAAACTTACTACCTATTGCTTGAGGAGTCTCTTATGAAATCTTTCAAGTCTCATCAACTCCCCGTGGATTCGATTTTGTTGAGCAATCCAACTAAGGATTCAACTCAGTATCTTGAATTGAGCTTACAAGTCTTCCCATCTAGACAGGACCATTTCAACCGAACAGGGATTTTAAGCATTGGTTTTCTGCTAAGTAACCAGACTTTCAAGCCTCCTGAGGACTTTGGACCATTCTATTTCATGGCAGATAAATATGGATACTTTGAGAGTTCTGAAGGATCGAGTTCAGTCATCGGAATCATAATTGGAGCTGCAGTTGGTGGATCAGTATTGCTNGTGTTGTTACTCCTAGCAGGTGTTTATGCTTTCCGCCAAAAGAAAAGGGCTGAAAAAGCAATTGGACAAAGCAACCCTTTTAGACGCTGGGATACAGCTGAGAGCAGCAATGACATACCTTACTTGACAGAAGCAAGACGGTTTTCTTTTGAAGAGCTTAAAAAATACACCAAGAATTTTTCTCAAGCCAATGAAGTTGGATCTGGAGGTTATGGGAAGGTTTATAAAGGAACCCTTCCCAATGGGCAGCTGATAGCAATAAAAAGGGCTCAAAAGGAATCTATGCAGGGAAAGTTTCAGTTTAAAGCAGAGATTGAACTCCTATCAAGGGTCCACCACAAGAATCTTGTTAGCCTTGTTGGATTTTGCTTCGAGCAAGGAGAACAAATGCTGGTTTATGAGTATATTCCAAATGGAACTTTAAAGGATGCTCTCTCAGGGAAATCAGGAATTGTATTGAATTGGATTAGAAGGCTAAAAGTTGCCCTTGGTACTGCACGGGGTTTGGCTTATCTCCATGAACATGCCAATCCTCCTATCATACACAGGGACATCAAATCCAACAATATTTTGCTGGATGAGCGCCTAAATGCCAAAGTTGCTGATTTTGGTCTCTCCAAGTCTATGGTTGATAGCGAGAAAGATCATGTTACAACTCAAGTTAAAGGAACAATGGGATACATGGATCCAGAGTATTATATGTCTCAACAATTGACTGAGAAGAGTGATGTTTATGGCTTTGGAGTGCTAATGTTGGAGCTGATATCTGCAAGAAGGCCAATAGAACGAGGGAAGTACATTGTGAAAGAGGTTAAGAATGCACTTGATAAGACAAAAGACTTGTGTGGCCTTCATGAAATCATTGATCCAGCCATTGGTTNAGCATCCACACTGATTGGGTTTGACAAGTTTGTGGATCTTGCCATGGAATGTGTTGAGGAGTCAGGTGCTGCCAGGCCTAAAATGAGTGAAGTGGTAAGGGAAATTGAGAACATATTGCAGTCAGNAGGTACAAACCCCACCGATGAATCACCTTCAATTTCTTCTAGTTATGAGGTCAGCGGAGGGAGTTCCTCCCATCCTTATAGCAACGACTCCTTTGATAAGATTGCAGGATTTCCATATCCTAAAGTTTGAGCCTAATTAGTAAGTACTTTAAAATTGAAATTCAACTTCTTTGTCAAGTATTAGTTTGCTNGGTTTGGAAAAAAACAAAGGAGCAAGAGGAAAAATGTTGATGCAGTGTGTGTATATGTGNGTGTGTTTGTAAAGATGTTGGATTAAGAATGGACGTGGTCCAAACTGCCTAGCAAAGGAAAGCCTTTAATTTCTGTAATAAGCTTNTGGTTGTTGTATCAAAGATATTTTTGGTAGGAATATTTATTGGCTCAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00030	339169	345975	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.3.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000030s00002344.1	PF12799.2	LRR_4	138	174	2.10E-06
Glyur000030s00002344.1	PF00069.20	Pkinase	633	897	1.80E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.316
SRR1783600	control	0.307
SRR1783602	moderate drought stress	0.414
SRR1811619	moderate drought stress	0.422

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.163
DRR006520	Root Summer glycyrrhizin high producing strain	0.169
DRR006521	Root Winter glycyrrhizin high producing strain	0.103
DRR006522	Root Winter glycyrrhizin high producing strain	0.101
DRR006523	Root Summer glycyrrhizin low producing strain	3.152
DRR006524	Root Summer glycyrrhizin low producing strain	3.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	60.706
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.522

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.170
SRR2868004	Drought Stress(Tissue:root)	1.909
SRR2967015	Control (Tissue:root)	1.425

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	72.242
SRR9715740	Leave	70.978
SRR9715741	Leave	99.258
SRR9715739	Root	0.232
SRR9715742	Root	1.120
SRR9715743	Root	1.018

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.033
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.020
SRR8749031	Uninduced	0.024
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.701
SRR8400027	Control-Root	2.288