Gene detail information of Glyur000030s00002350.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G10320.10tRNA synthetase class I (I, L, M and V) family protein
NRAES89548.20isoleucine-tRNA ligase [Medicago truncatula]
COGNP_969094.10isoleucyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
Swissprottr|P93736|SYV_ARATH6.00E-23Valine--tRNA ligase
trEMBLtr|I1LIK8|I1LIK8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G09990.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00030403672420184+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01870IARS, ileS EC:6.1.1.5 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006428  isoleucyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0002161  aminoacyl-tRNA editing activity

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004822  isoleucine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000030s00002350.1PF00133.17tRNA-synt_126461.30E-205
Glyur000030s00002350.1PF08264.8Anticodon_17018244.70E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.730
SRR1783600control1.510
SRR1783602moderate drought stress3.324
SRR1811619moderate drought stress3.246

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.819
DRR006520Root Summer glycyrrhizin high producing strain3.860
DRR006521Root Winter glycyrrhizin high producing strain1.827
DRR006522Root Winter glycyrrhizin high producing strain1.777
DRR006523Root Summer glycyrrhizin low producing strain0.732
DRR006524Root Summer glycyrrhizin low producing strain0.657
DRR006525Leaf Summer glycyrrhizin high producing strain1.003
DRR006526Leaf Summer glycyrrhizin high producing strain0.963

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.776
SRR2868004Drought Stress(Tissue:root)2.459
SRR2967015Control (Tissue:root)2.682

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.932
SRR9715740Leave6.528
SRR9715741Leave3.410
SRR9715739Root2.349
SRR9715742Root8.859
SRR9715743Root6.784

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.616
SRR8749028MeJA induced 9h4.323
SRR8749029MeJA induced 9h1.961
SRR8749030Uninduced0.372
SRR8749031Uninduced0.480
SRR8749032Uninduced0.248

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.639
SRR8400027Control-Root9.207

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved