Gene detail information of Glyur000030s00002353.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G47780.10galacturonosyltransferase 4
NRKHN40223.10Putative galacturonosyltransferase 4 [Glycine soja]
COGNP_346200.11.00E-07glycosyl transferase family protein [Streptococcus pneumoniae TIGR4]
Swissprottr|Q93ZX7|GAUT4_ARATH0Probable galacturonosyltransferase 4
trEMBLtr|K7MJ90|K7MJ90_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G00782.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00030427825432761-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13648GAUT EC:2.4.1.43 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

molecular_function

GO:0016757  transferase activity, transferring glycosyl groups

GO:0047262  polygalacturonate 4-alpha-galacturonosyltransferase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000030s00002353.1PF01501.15Glyco_transf_83306389.20E-72


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.657
SRR1783600control20.956
SRR1783602moderate drought stress21.011
SRR1811619moderate drought stress20.761

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.117
DRR006520Root Summer glycyrrhizin high producing strain19.682
DRR006521Root Winter glycyrrhizin high producing strain21.371
DRR006522Root Winter glycyrrhizin high producing strain20.647
DRR006523Root Summer glycyrrhizin low producing strain23.498
DRR006524Root Summer glycyrrhizin low producing strain24.049
DRR006525Leaf Summer glycyrrhizin high producing strain14.963
DRR006526Leaf Summer glycyrrhizin high producing strain14.946

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.481
SRR2868004Drought Stress(Tissue:root)15.379
SRR2967015Control (Tissue:root)18.017

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.199
SRR9715740Leave11.314
SRR9715741Leave13.126
SRR9715739Root6.414
SRR9715742Root24.992
SRR9715743Root20.502

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.493
SRR8749028MeJA induced 9h8.307
SRR8749029MeJA induced 9h5.347
SRR8749030Uninduced2.887
SRR8749031Uninduced0.752
SRR8749032Uninduced0.842

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.020
SRR8400027Control-Root35.612

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved