Gene detail information of Glyur000030s00002364.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G33730.19.00E-122P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRKEH32703.12.25E-178DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
COGYP_003060608.12.00E-21DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
Swissprottr|P93008|RH21_ARATH1.00E-166DEAD-box ATP-dependent RNA helicase 21
trEMBLtr|A0A072UUE3|A0A072UUE3_MEDTR8.00E-179DEAD-box ATP-dependent RNA helicase {ECO:0000313|EMBL:KEH32703.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00030531883534633-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12858DDX23, PRP28 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000030s00002364.1PF00270.24DEAD3113852.20E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control54.521
SRR1783600control54.679
SRR1783602moderate drought stress83.436
SRR1811619moderate drought stress82.456

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain93.391
DRR006520Root Summer glycyrrhizin high producing strain91.995
DRR006521Root Winter glycyrrhizin high producing strain79.703
DRR006522Root Winter glycyrrhizin high producing strain76.033
DRR006523Root Summer glycyrrhizin low producing strain51.674
DRR006524Root Summer glycyrrhizin low producing strain51.003
DRR006525Leaf Summer glycyrrhizin high producing strain27.791
DRR006526Leaf Summer glycyrrhizin high producing strain26.881

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)50.551
SRR2868004Drought Stress(Tissue:root)51.000
SRR2967015Control (Tissue:root)46.214

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.917
SRR9715740Leave26.181
SRR9715741Leave27.046
SRR9715739Root108.406
SRR9715742Root74.294
SRR9715743Root75.673

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.544
SRR8749028MeJA induced 9h31.139
SRR8749029MeJA induced 9h7.736
SRR8749030Uninduced5.921
SRR8749031Uninduced5.839
SRR8749032Uninduced7.376

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root65.977
SRR8400027Control-Root63.768

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved