Gene detail

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Gene detail information of Glyur000031s00004348.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49810.1	6.00E-125	ARM repeat superfamily protein
NR	XP_007136778.1	0	hypothetical protein PHAVU_009G073300g [Phaseolus vulgaris]
COG	YP_001957949.1	1.00E-08	hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q058P4\|PUB30_ARATH	4.00E-166	U-box domain-containing protein 30
trEMBL	tr\|V7ASZ5\|V7ASZ5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08772.1}

Sequence

Transcript Sequence

>Glyur000031s00004348.1
ATGGTTTCAGGTGGTGGCATTCCTGAAAAACTGGATCTGAAGATGTTAATTGAGGAAATGGAGTACTCAATTGATGTTCCCTCGGTTTTCATCTGCCCAATCTCTCTGGAACCAATGCGAGACCCTGTGACCCTTTGCACGGGCCAAACCTACGACAGGCCCAACATCCTCAAATGGTTCTCACTCGGTCACAACACGTGTCCCGCGACAATGCAGGAGCTTTGGGACAATTCCATCACACCCAACACCACCCTCAACAGTTTCATCTTCAATTGGTTCTTGCAGAAATACTTGGCCAATAAGAAGAAATTCGAGGGTTTACAAGGAAAAGCCTTGGAGCTCTTGGACACACTCAGCAAGGTAAAGGGTCAAGCCAGAGTTCAAGCTCTCAAGGANCTTCGCAAGCTCGTTGATTCCCATGCTTCCACGAGGAGGATTGTTGCGGAAAATGGTGGGCTTGCTTTGGTTTCTTCGTTTTTGGGTCCATTCACTTCACATGCCGTTGGGTCTCAAGTCATTGGGATTCTCGTGAATTTGGATTTGAGCTTGGAGTTGAAGAAAAAATTGATGCATCCGGCGAAGGTGTCGTTGTTGGTGGATATTATGAACGAAGGTACCATTCAGACAAAGATGAATTGTGCCAAATTGATTGAAATGTTGTTGATGGAATTGGAAGGGGATGATGACACCGAGACACGTGTCGTGTCAAGCTTGAGTCTTTTGGTTGGGTTGTTGAGGTTAGTTAAGGATAAGAAACACCCAACAGGGGTTTTAACAGGACTCATATTACTCAAGATTATATGCTCTCGCGAATCGGCTAGAGGCTCTGTTGTGAGTATNGGAGTTGTGCCTCAATTGATTGAGCTTTTGCCCAGTTTGAATAACGAGTGTTTGGAAATAGCACTTTGTATTCTTGAGGTGTTGTCAACGGTTCCAGAAGGAAGAGTGGCTTTGAAAGAGTGTCCAAACATTATACCCAATGTGGTTAAGTTGTTGATGAGAGTCTCTGAGAGTTGCACCCAATTCGCGTTGTCGATTCTGTGGGCTGTGTATAAGCTTGCGCCGGAGGAATGTGCTTCCAAGGCCGTGGAGGCTGGGTTGGCGGCGAAGCTACTTCTGGTGATTCAGAGTGGTTGCAACCCTGTGTTGAAACAGAAATCTGCTGAGTTTTTGAAATTGTGTAGTCTTGATTACTCTGCTAGAACTACTGTTTATGGCAGGGCAGAAAATGTGCAAGGCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00031	66457	68299	-

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function GO:0004842 ubiquitin-protein transferase activity GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000031s00004348.1	PF04564.10	U-box	26	96	1.80E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.687
SRR1783600	control	2.608
SRR1783602	moderate drought stress	2.028
SRR1811619	moderate drought stress	2.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.657
DRR006520	Root Summer glycyrrhizin high producing strain	3.708
DRR006521	Root Winter glycyrrhizin high producing strain	0.094
DRR006522	Root Winter glycyrrhizin high producing strain	0.173
DRR006523	Root Summer glycyrrhizin low producing strain	4.336
DRR006524	Root Summer glycyrrhizin low producing strain	4.229
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.927
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.998

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.769
SRR2868004	Drought Stress(Tissue:root)	3.487
SRR2967015	Control (Tissue:root)	6.530

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.383
SRR9715740	Leave	0.188
SRR9715741	Leave	0.207
SRR9715739	Root	11.954
SRR9715742	Root	5.397
SRR9715743	Root	6.612

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.113
SRR8749028	MeJA induced 9h	0.118
SRR8749029	MeJA induced 9h	0.315
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	9.801
SRR8400027	Control-Root	13.127