Gene detail information of Glyur000031s00004351.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G10130.10endoplasmic reticulum-type calcium-transporting ATPase 3
NRXP_003524018.10PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like isoformX1 [Glycine max]
COGYP_003827554.12.00E-160ATPase P [Acetohalobium arabaticum DSM 5501]
Swissprottr|Q9SY55|ECA3_ARATH0Calcium-transporting ATPase 3, endoplasmic reticulum-type
trEMBLtr|K7KI34|K7KI34_SOYBN0Calcium-transporting ATPase {ECO:0000256|RuleBase:RU361146}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0003182173107606-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05853ATP2A EC:3.6.3.8 Calcium signaling pathway map04020
cGMP - PKG signaling pathwaymap04022
Pancreatic secretionmap04972
Alzheimer's diseasemap05010


Gene Ontology

cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0000166  nucleotide binding

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000031s00004351.1PF00122.15E1-E2_ATPase612985.70E-56
Glyur000031s00004351.1PF00702.21Hydrolase3036961.70E-26
Glyur000031s00004351.1PF00689.16Cation_ATPase_C7668233.60E-16
Glyur000031s00004351.1PF00689.16Cation_ATPase_C8679983.60E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.759
SRR1783600control13.765
SRR1783602moderate drought stress13.044
SRR1811619moderate drought stress13.001

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.997
DRR006520Root Summer glycyrrhizin high producing strain21.538
DRR006521Root Winter glycyrrhizin high producing strain14.912
DRR006522Root Winter glycyrrhizin high producing strain14.772
DRR006523Root Summer glycyrrhizin low producing strain15.431
DRR006524Root Summer glycyrrhizin low producing strain15.310
DRR006525Leaf Summer glycyrrhizin high producing strain6.386
DRR006526Leaf Summer glycyrrhizin high producing strain6.293

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)40.265
SRR2868004Drought Stress(Tissue:root)39.048
SRR2967015Control (Tissue:root)39.127

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.847
SRR9715740Leave13.743
SRR9715741Leave15.437
SRR9715739Root7.807
SRR9715742Root21.220
SRR9715743Root20.500

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.639
SRR8749028MeJA induced 9h28.251
SRR8749029MeJA induced 9h18.808
SRR8749030Uninduced7.878
SRR8749031Uninduced6.477
SRR8749032Uninduced8.507

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root40.390
SRR8400027Control-Root40.839

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved