Gene detail information of Glyur000031s00004361.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G10200.16.00E-91GATA type zinc finger transcription factor family protein
NRNP_001235758.12.84E-128uncharacterized protein LOC100305720 [Glycine max]
Swissprottr|Q94JX5|WLIM1_ARATH4.00E-115LIM domain-containing protein WLIM1 {ECO:0000305}
trEMBLtr|C6SWD0|C6SWD0_SOYBN1.00E-128Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G04880.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00031143221145333-


Gene family

Gene familysubfamily
Transcription Factors FamilyLIM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000031s00004361.1PF00412.17LIM10641.70E-12
Glyur000031s00004361.1PF00412.17LIM1101649.20E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control47.813
SRR1783600control47.968
SRR1783602moderate drought stress42.549
SRR1811619moderate drought stress42.104

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain51.059
DRR006520Root Summer glycyrrhizin high producing strain50.485
DRR006521Root Winter glycyrrhizin high producing strain35.315
DRR006522Root Winter glycyrrhizin high producing strain33.844
DRR006523Root Summer glycyrrhizin low producing strain32.450
DRR006524Root Summer glycyrrhizin low producing strain30.936
DRR006525Leaf Summer glycyrrhizin high producing strain121.559
DRR006526Leaf Summer glycyrrhizin high producing strain119.334

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.155
SRR2868004Drought Stress(Tissue:root)21.390
SRR2967015Control (Tissue:root)21.824

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave29.272
SRR9715740Leave61.922
SRR9715741Leave24.135
SRR9715739Root2.353
SRR9715742Root3.097
SRR9715743Root2.825

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.447
SRR8749028MeJA induced 9h0.798
SRR8749029MeJA induced 9h0.842
SRR8749030Uninduced0.415
SRR8749031Uninduced0.179
SRR8749032Uninduced0.266

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.634
SRR8400027Control-Root50.325

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved