Gene detail information of Glyur000031s00004367.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G27840.14.00E-159Transducin/WD40 repeat-like superfamily protein
NRKEH35824.10transducin/WD-like repeat-protein [Medicago truncatula]
COGNP_487506.13.00E-15hypothetical protein alr3466 [Nostoc sp. PCC 7120]
Swissprottr|Q8H0T9|KTNB1_ARATH1.00E-10Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|A0A072V1E5|A0A072V1E5_MEDTR0Transducin/WD-like repeat-protein {ECO:0000313|EMBL:KEH35824.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00031163665166130+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000031s00004367.1PF00400.27WD4038740.03
Glyur000031s00004367.1PF00400.27WD401011340.0027
Glyur000031s00004367.1PF00400.27WD401862213.90E-07
Glyur000031s00004367.1PF00400.27WD403013324.90E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.033
SRR1783600control13.015
SRR1783602moderate drought stress18.014
SRR1811619moderate drought stress17.623

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.649
DRR006520Root Summer glycyrrhizin high producing strain26.681
DRR006521Root Winter glycyrrhizin high producing strain33.625
DRR006522Root Winter glycyrrhizin high producing strain33.159
DRR006523Root Summer glycyrrhizin low producing strain34.428
DRR006524Root Summer glycyrrhizin low producing strain33.905
DRR006525Leaf Summer glycyrrhizin high producing strain17.052
DRR006526Leaf Summer glycyrrhizin high producing strain16.618

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.445
SRR2868004Drought Stress(Tissue:root)24.361
SRR2967015Control (Tissue:root)28.269

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.385
SRR9715740Leave26.808
SRR9715741Leave20.458
SRR9715739Root4.649
SRR9715742Root10.202
SRR9715743Root10.762

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.299
SRR8749028MeJA induced 9h16.472
SRR8749029MeJA induced 9h12.961
SRR8749030Uninduced12.099
SRR8749031Uninduced12.190
SRR8749032Uninduced16.179

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.998
SRR8400027Control-Root23.289

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved