Gene detail information of Glyur000031s00004369.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58610.1 | 2.00E-70 | PHD finger transcription factor, putative |
| NR | XP_006582474.1 | 5.60E-176 | PREDICTED: uncharacterized protein LOC102668789 [Glycine max] |
| Swissprot | tr|F4KBP5|CHR4_ARATH | 3.00E-08 | Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|K7KT35|K7KT35_SOYBN | 2.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G04941.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 168519 | 170748 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004369.1 | PF00628.24 | PHD | 272 | 314 | 1.30E-09 |
| Glyur000031s00004369.1 | PF00583.19 | Acetyltransf_1 | 454 | 516 | 1.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.022 |
| SRR1811619 | moderate drought stress | 0.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.063 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.003 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.065 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.064 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.071 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.014 |
| SRR2967015 | Control (Tissue:root) | 0.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.039 |
| SRR9715740 | Leave | 0.075 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.024 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.050 |
| SRR8400027 | Control-Root | 0.079 |