Gene detail information of Glyur000031s00004378.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33880.1 | 4.00E-38 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
| NR | KEH35808.1 | 1.74E-134 | transcription factor [Medicago truncatula] |
| Swissprot | tr|Q84WK0|BH085_ARATH | 2.00E-56 | Transcription factor bHLH85 |
| trEMBL | tr|A0A072V390|A0A072V390_MEDTR | 6.00E-135 | Transcription factor {ECO:0000313|EMBL:KEH35808.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00031 | 224868 | 226487 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000031s00004378.1 | PF00010.21 | HLH | 249 | 289 | 6.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.442 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.547 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.210 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.350 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.111 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.113 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.279 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.543 |
| SRR2967015 | Control (Tissue:root) | 0.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.404 |
| SRR9715740 | Leave | 0.183 |
| SRR9715741 | Leave | 0.451 |
| SRR9715739 | Root | 0.096 |
| SRR9715742 | Root | 2.958 |
| SRR9715743 | Root | 1.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.066 |
| SRR8749029 | MeJA induced 9h | 0.043 |
| SRR8749030 | Uninduced | 0.493 |
| SRR8749031 | Uninduced | 0.156 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.304 |
| SRR8400027 | Control-Root | 0.322 |