Gene detail information of Glyur000032s00003900.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19900.1 | 5.00E-175 | alpha 1,4-glycosyltransferase family protein |
| NR | XP_003607886.1 | 0 | hypothetical protein MTR_4g084060 [Medicago truncatula] |
| Swissprot | tr|P0C8Q4|Y4990_ARATH | 0 | Uncharacterized protein At4g19900 |
| trEMBL | tr|Q2MGS1|Q2MGS1_MEDTR | 0 | Glycosyltransferase sugar-binding region containing DXD motif; Alpha 1,4-glycosyltransferase conserved region {ECO:0000313|EMBL:ABC75355.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00032 | 249794 | 253858 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT32 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000032s00003900.1 | PF04488.10 | Gly_transf_sug | 316 | 430 | 7.90E-23 |
| Glyur000032s00003900.1 | PF04572.7 | Gb3_synth | 443 | 572 | 7.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 53.382 |
| SRR1783600 | control | 53.779 |
| SRR1783602 | moderate drought stress | 72.578 |
| SRR1811619 | moderate drought stress | 71.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.820 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.341 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 58.169 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 56.809 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.122 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.594 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.517 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.802 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.738 |
| SRR2967015 | Control (Tissue:root) | 32.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.882 |
| SRR9715740 | Leave | 10.507 |
| SRR9715741 | Leave | 18.961 |
| SRR9715739 | Root | 18.298 |
| SRR9715742 | Root | 38.500 |
| SRR9715743 | Root | 34.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 40.299 |
| SRR8749028 | MeJA induced 9h | 22.880 |
| SRR8749029 | MeJA induced 9h | 26.652 |
| SRR8749030 | Uninduced | 7.520 |
| SRR8749031 | Uninduced | 5.325 |
| SRR8749032 | Uninduced | 7.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.500 |
| SRR8400027 | Control-Root | 31.493 |