Gene detail information of Glyur000032s00003924.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30080.1 | 1.00E-137 | Glycosyl hydrolase superfamily protein |
| NR | KEH30835.1 | 0 | glycoside hydrolase family 17 protein [Medicago truncatula] |
| Swissprot | tr|Q8L868|E1311_ARATH | 2.00E-119 | Glucan endo-1,3-beta-glucosidase 11 (Precursor) |
| trEMBL | tr|A0A072UYA7|A0A072UYA7_MEDTR | 0 | Glycoside hydrolase family 17 protein {ECO:0000313|EMBL:KEH30835.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00032 | 367720 | 369344 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000032s00003924.1 | PF00332.13 | Glyco_hydro_17 | 37 | 353 | 2.40E-90 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.130 |
| SRR1811619 | moderate drought stress | 0.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.158 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.696 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.424 |
| SRR2967015 | Control (Tissue:root) | 1.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.483 |
| SRR9715740 | Leave | 0.597 |
| SRR9715741 | Leave | 1.878 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.319 |
| SRR9715743 | Root | 0.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.764 |
| SRR8749028 | MeJA induced 9h | 2.613 |
| SRR8749029 | MeJA induced 9h | 0.541 |
| SRR8749030 | Uninduced | 9.027 |
| SRR8749031 | Uninduced | 50.163 |
| SRR8749032 | Uninduced | 18.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.517 |
| SRR8400027 | Control-Root | 0.236 |