Gene detail information of Glyur000032s00003929.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G01490.12.00E-119phytanoyl-CoA dioxygenase (PhyH) family protein
NRKHN43010.10Phytanoyl-CoA dioxygenase domain-containing protein 1 [Glycine soja]
COGYP_008153123.14.00E-88hypothetical protein SCE1572_33750 [Sorangium cellulosum So0157-2]
Swissprottr|Q9ZVF6|PAHX_ARATH1.00E-151Phytanoyl-CoA dioxygenase
trEMBLtr|I1KM64|I1KM64_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G34410.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00032409852412801-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00477PHYH EC:1.14.11.18 Peroxisome map04146


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000032s00003929.1PF05721.8PhyH122491.50E-62


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.886
SRR1783600control20.611
SRR1783602moderate drought stress20.711
SRR1811619moderate drought stress19.976

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.272
DRR006520Root Summer glycyrrhizin high producing strain30.933
DRR006521Root Winter glycyrrhizin high producing strain36.158
DRR006522Root Winter glycyrrhizin high producing strain34.394
DRR006523Root Summer glycyrrhizin low producing strain33.367
DRR006524Root Summer glycyrrhizin low producing strain32.865
DRR006525Leaf Summer glycyrrhizin high producing strain28.750
DRR006526Leaf Summer glycyrrhizin high producing strain27.707

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)40.435
SRR2868004Drought Stress(Tissue:root)49.186
SRR2967015Control (Tissue:root)46.559

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.435
SRR9715740Leave22.936
SRR9715741Leave32.700
SRR9715739Root13.036
SRR9715742Root20.866
SRR9715743Root20.943

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.109
SRR8749028MeJA induced 9h37.007
SRR8749029MeJA induced 9h9.139
SRR8749030Uninduced12.675
SRR8749031Uninduced21.434
SRR8749032Uninduced4.428

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root42.233
SRR8400027Control-Root39.894

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved