Gene detail information of Glyur000033s00008623.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G04790.16.00E-50RING/U-box superfamily protein
NRXP_006605726.10PREDICTED: uncharacterized protein LOC100796218 isoform X1 [Glycine max]
Swissprottr|Q9M2S6|SDIR1_ARATH1.00E-16E3 ubiquitin-protein ligase SDIR1
trEMBLtr|K7N266|K7N266_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G18933.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00033237879248723+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000033s00008623.1PF13639.1zf-RING_27087503.20E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.766
SRR1783600control11.947
SRR1783602moderate drought stress16.948
SRR1811619moderate drought stress16.669

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.010
DRR006520Root Summer glycyrrhizin high producing strain16.866
DRR006521Root Winter glycyrrhizin high producing strain18.871
DRR006522Root Winter glycyrrhizin high producing strain18.263
DRR006523Root Summer glycyrrhizin low producing strain12.678
DRR006524Root Summer glycyrrhizin low producing strain12.454
DRR006525Leaf Summer glycyrrhizin high producing strain9.372
DRR006526Leaf Summer glycyrrhizin high producing strain9.344

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.096
SRR2868004Drought Stress(Tissue:root)14.976
SRR2967015Control (Tissue:root)18.645

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.449
SRR9715740Leave12.021
SRR9715741Leave11.654
SRR9715739Root1.816
SRR9715742Root8.870
SRR9715743Root6.847

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.955
SRR8749028MeJA induced 9h30.665
SRR8749029MeJA induced 9h19.542
SRR8749030Uninduced11.116
SRR8749031Uninduced17.237
SRR8749032Uninduced12.828

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.985
SRR8400027Control-Root14.329

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved