Gene detail information of Glyur000033s00008625.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G33150.10peroxisomal 3-ketoacyl-CoA thiolase 3
NRXP_008457258.10PREDICTED: 3-ketoacyl-CoA thiolase 2, peroxisomal-like [Cucumis melo]
COGYP_001678708.11.00E-111acetyl-CoA acetyltransferase [Heliobacterium modesticaldum Ice1]
Swissprottr|Q56WD9|THIK2_ARATH03-ketoacyl-CoA thiolase 2, peroxisomal (Precursor)
trEMBLtr|I1NEH3|I1NEH3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G18980.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00033250276256177-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07513ACAA1 EC:2.3.1.16 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592
Biosynthesis of unsaturated fatty acidsmap01040
Valine, leucine and isoleucine degradationmap00280
Peroxisomemap04146
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000033s00008625.1PF00108.18Thiolase_N563102.40E-77
Glyur000033s00008625.1PF02803.13Thiolase_C3184203.20E-40


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control76.721
SRR1783600control75.820
SRR1783602moderate drought stress58.777
SRR1811619moderate drought stress57.502

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain124.908
DRR006520Root Summer glycyrrhizin high producing strain124.661
DRR006521Root Winter glycyrrhizin high producing strain106.637
DRR006522Root Winter glycyrrhizin high producing strain102.028
DRR006523Root Summer glycyrrhizin low producing strain83.330
DRR006524Root Summer glycyrrhizin low producing strain83.408
DRR006525Leaf Summer glycyrrhizin high producing strain91.122
DRR006526Leaf Summer glycyrrhizin high producing strain90.378

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)152.988
SRR2868004Drought Stress(Tissue:root)151.472
SRR2967015Control (Tissue:root)157.640

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave129.085
SRR9715740Leave150.188
SRR9715741Leave157.866
SRR9715739Root91.953
SRR9715742Root112.023
SRR9715743Root106.123

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h102.018
SRR8749028MeJA induced 9h112.036
SRR8749029MeJA induced 9h95.128
SRR8749030Uninduced91.919
SRR8749031Uninduced113.224
SRR8749032Uninduced76.198

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root132.025
SRR8400027Control-Root118.017

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved