Gene detail information of Glyur000033s00008628.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G13710.1 | 0 | Pectin lyase-like superfamily protein |
| NR | KEH41255.1 | 0 | pectate lyase family protein [Medicago truncatula] |
| COG | YP_003976318.1 | 6.00E-26 | pectate lyase family protein [Achromobacter xylosoxidans A8] |
| Swissprot | tr|Q944R1|PLY15_ARATH | 0 | Probable pectate lyase 15 (Precursor) |
| trEMBL | tr|A0A072VT00|A0A072VT00_MEDTR | 0 | Pectate lyase {ECO:0000256|RuleBase:RU361123} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00033 | 296918 | 302601 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | PL1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01728 | pel | EC:4.2.2.2 | Pentose and glucuronate interconversions | map00040 |
| Quorum sensing | map02024 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000033s00008628.1 | PF00544.14 | Pec_lyase_C | 174 | 363 | 1.60E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 72.122 |
| SRR1783600 | control | 72.668 |
| SRR1783602 | moderate drought stress | 40.379 |
| SRR1811619 | moderate drought stress | 40.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 191.220 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 189.238 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.394 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.439 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.273 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 169.510 |
| SRR2868004 | Drought Stress(Tissue:root) | 96.732 |
| SRR2967015 | Control (Tissue:root) | 125.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 32.041 |
| SRR9715740 | Leave | 0.948 |
| SRR9715741 | Leave | 5.583 |
| SRR9715739 | Root | 37.227 |
| SRR9715742 | Root | 12.508 |
| SRR9715743 | Root | 16.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.592 |
| SRR8749028 | MeJA induced 9h | 0.115 |
| SRR8749029 | MeJA induced 9h | 0.253 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 150.116 |
| SRR8400027 | Control-Root | 253.583 |