Gene detail information of Glyur000033s00008642.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G24050.14.00E-35GATA transcription factor 1
NRKHN48447.14.83E-122GATA transcription factor 1 [Glycine soja]
Swissprottr|Q8LAU9|GATA1_ARATH2.00E-46GATA transcription factor 1
trEMBLtr|I1LAK4|I1LAK4_SOYBN4.00E-123Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G25480.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00033432921435952-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000033s00008642.2PF00320.22GATA2072416.30E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.768
SRR1783600control9.802
SRR1783602moderate drought stress12.090
SRR1811619moderate drought stress12.015

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.345
DRR006520Root Summer glycyrrhizin high producing strain14.472
DRR006521Root Winter glycyrrhizin high producing strain20.996
DRR006522Root Winter glycyrrhizin high producing strain20.920
DRR006523Root Summer glycyrrhizin low producing strain16.312
DRR006524Root Summer glycyrrhizin low producing strain16.824
DRR006525Leaf Summer glycyrrhizin high producing strain13.599
DRR006526Leaf Summer glycyrrhizin high producing strain13.319

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.190
SRR2868004Drought Stress(Tissue:root)9.635
SRR2967015Control (Tissue:root)9.700

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.775
SRR9715740Leave23.797
SRR9715741Leave14.036
SRR9715739Root8.024
SRR9715742Root10.597
SRR9715743Root10.303

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.265
SRR8749028MeJA induced 9h8.051
SRR8749029MeJA induced 9h12.106
SRR8749030Uninduced6.635
SRR8749031Uninduced3.135
SRR8749032Uninduced4.316

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.268
SRR8400027Control-Root13.386

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved