Gene detail information of Glyur000033s00008645.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24040.1 | 1.00E-116 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | KEH41216.1 | 0 | core-2/I-branching enzyme [Medicago truncatula] |
| trEMBL | tr|A0A072VHX3|A0A072VHX3_MEDTR | 0 | Core-2/I-branching enzyme {ECO:0000313|EMBL:KEH41216.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00033 | 447900 | 450783 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT14 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000033s00008645.1 | PF02485.16 | Branch | 90 | 302 | 2.00E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.424 |
| SRR1783600 | control | 40.024 |
| SRR1783602 | moderate drought stress | 38.791 |
| SRR1811619 | moderate drought stress | 38.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.339 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.915 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.001 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.482 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.336 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.763 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.762 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 33.181 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.031 |
| SRR2967015 | Control (Tissue:root) | 31.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.925 |
| SRR9715740 | Leave | 13.732 |
| SRR9715741 | Leave | 13.707 |
| SRR9715739 | Root | 13.759 |
| SRR9715742 | Root | 21.489 |
| SRR9715743 | Root | 19.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.394 |
| SRR8749028 | MeJA induced 9h | 28.767 |
| SRR8749029 | MeJA induced 9h | 18.490 |
| SRR8749030 | Uninduced | 8.433 |
| SRR8749031 | Uninduced | 6.335 |
| SRR8749032 | Uninduced | 8.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.248 |
| SRR8400027 | Control-Root | 34.386 |