Gene detail information of Glyur000034s00002895.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G26710.10Glutamyl/glutaminyl-tRNA synthetase, class Ic
NRKHN13967.10Putative glutamate--tRNA ligase, cytoplasmic [Glycine soja]
COGYP_006426721.13.00E-87glutaminyl-tRNA synthetase [Ornithobacterium rhinotracheale DSM 15997]
Swissprottr|P52780|SYQ_LUPLU3.00E-66Glutamine--tRNA ligase
trEMBLtr|I1LAX4|I1LAX4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G28180.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000341312417103+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01885EARS, gltX EC:6.1.1.17 Porphyrin and chlorophyll metabolism map00860
Aminoacyl-tRNA biosynthesismap00970


Gene Ontology

biological_process

GO:0006412  translation

GO:0006418  tRNA aminoacylation for protein translation

GO:0006424  glutamyl-tRNA aminoacylation

GO:0043039  tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004818  glutamate-tRNA ligase activity

GO:0005524  ATP binding

GO:0016876  ligase activity, forming aminoacyl-tRNA and related compounds

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000034s00002895.1PF14497.1GST_C_3731555.70E-11
Glyur000034s00002895.1PF00749.16tRNA-synt_1c2245283.60E-97
Glyur000034s00002895.1PF03950.13tRNA-synt_1c_C5317082.40E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.017
SRR1783600control26.530
SRR1783602moderate drought stress25.048
SRR1811619moderate drought stress25.089

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.856
DRR006520Root Summer glycyrrhizin high producing strain32.661
DRR006521Root Winter glycyrrhizin high producing strain32.961
DRR006522Root Winter glycyrrhizin high producing strain32.121
DRR006523Root Summer glycyrrhizin low producing strain24.722
DRR006524Root Summer glycyrrhizin low producing strain24.658
DRR006525Leaf Summer glycyrrhizin high producing strain17.513
DRR006526Leaf Summer glycyrrhizin high producing strain17.365

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)60.792
SRR2868004Drought Stress(Tissue:root)50.589
SRR2967015Control (Tissue:root)46.859

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.987
SRR9715740Leave18.995
SRR9715741Leave25.208
SRR9715739Root10.493
SRR9715742Root37.587
SRR9715743Root33.940

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h47.491
SRR8749028MeJA induced 9h41.676
SRR8749029MeJA induced 9h51.306
SRR8749030Uninduced49.692
SRR8749031Uninduced62.275
SRR8749032Uninduced64.796

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root50.329
SRR8400027Control-Root42.971

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved