Gene detail information of Glyur000034s00002898.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G26680.25.00E-1695'-3' exonuclease family protein
NRXP_004495821.10PREDICTED: flap endonuclease 1-like isoform X1 [Cicer arietinum]
COGNP_558779.17.00E-66flap endonuclease-1 [Pyrobaculum aerophilum str. IM2]
Swissprottr|C6TEX6|FEN1_SOYBN0Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}
trEMBLtr|I1NES9|I1NES9_SOYBN0Flap endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_03140}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000342366028408-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04799FEN1, RAD2 EC:3.-.-.- DNA replication map03030
Base excision repairmap03410
Non-homologous end-joiningmap03450


Gene Ontology

biological_process

GO:0006281  DNA repair


molecular_function

GO:0003677  DNA binding

GO:0003824  catalytic activity

GO:0004518  nuclease activity

GO:0016788  hydrolase activity, acting on ester bonds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000034s00002898.1PF00752.12XPG_N11083.90E-30
Glyur000034s00002898.1PF00867.13XPG_I1562172.30E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.276
SRR1783600control7.697
SRR1783602moderate drought stress5.792
SRR1811619moderate drought stress5.616

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.559
DRR006520Root Summer glycyrrhizin high producing strain14.731
DRR006521Root Winter glycyrrhizin high producing strain13.326
DRR006522Root Winter glycyrrhizin high producing strain13.551
DRR006523Root Summer glycyrrhizin low producing strain12.277
DRR006524Root Summer glycyrrhizin low producing strain12.240
DRR006525Leaf Summer glycyrrhizin high producing strain6.909
DRR006526Leaf Summer glycyrrhizin high producing strain7.179

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.279
SRR2868004Drought Stress(Tissue:root)18.958
SRR2967015Control (Tissue:root)18.333

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.543
SRR9715740Leave6.122
SRR9715741Leave3.521
SRR9715739Root1.280
SRR9715742Root5.558
SRR9715743Root5.598

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h90.162
SRR8749028MeJA induced 9h50.769
SRR8749029MeJA induced 9h61.636
SRR8749030Uninduced16.497
SRR8749031Uninduced14.558
SRR8749032Uninduced14.442

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.480
SRR8400027Control-Root20.772

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved