Gene detail

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Gene detail information of Glyur000034s00002902.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26670.1	7.00E-175	Pectinacetylesterase family protein
NR	AFK38038.1	0	unknown [Medicago truncatula]
trEMBL	tr\|I3SCP6\|I3SCP6_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK38038.1}

Sequence

Transcript Sequence

>Glyur000034s00002902.1
AGCGAGGAGAATAAAATGGCCCTCCTNTGCTGCTAATAAATCAACCAAAGTGGTGTGTGTGCAGCTTTGTGTTGTTTTTCTTTCTTTCACAAACACAGAGAGAGCGGTAGAATTAAGAAAGAGCCATGGCGAACCTTTTCTGGGTTGGCATTGTAATAGGACTTGTTTTCACCAACTGGGTTCATGCCTCTTCACCCTATCAATATCAACATCACCACATCAATGAAACAGAGTTGTCTCTATTGGAGGCTCATGAAGCTTCCTCAGCCTTGTTTGGGAGGAATCCTCTGATGGTAGGACTCACCCTTATTCAAAGTGCTGCTGCTAAAGGAGCAGTATGCTTGGATGGAACATTGCCTGCTTATCATTTTCACCAGGGGTACGGATCAGGGGCAAACAGCTGGCTCGTTAATTTAGAGGGTGGTGGATGGTGTAATAACGTTAGAACATGTGTCTACCGCAAGAAAACACGGAGGGGATCATCAGCATTCATGGAAAAGGAGATACCCTTTACGGGAATATTAAGCAATAATGCTCAAGAGAATCCAGATTTTTTCAACTGGAACAGGGTGAAAATTCGTTATTGTGATGGTGCCTCTTTTACCGGGGANGCTGAAGATAAGGTTGCGCAACTGCAATTCAGAGGACAACGTATTTGGTTGGCTGCAATGGAGGATTTGATGTCAAGGGGAATGCGTTTTGCCAAGCAGGCTCTTCTTTCTGGATGCTCAGCCGGTGGTTTGGCTACTATTATACACTGTGATGAATTTCGAGGTCTATTCCCAAGGACTACCAGAGTGAAGTGTCTTAGTGATGCCGGGTTATTTCTTGACGCCATGGATGTATCTGGTGGACACACCCTCAGGAATTTTTTCAGTGGTGTTGTAAGGCTACAGGGAGCACAGAAGAATCTTCCACNCATTTGTACTAATCACCTTGATCCCACTTCGTGCTTCTTCCCTCAGAACTTGATTGCCAGTATTAGAACCCCACTATTCATTCTCAATACTGCCTATGATTCATGGCAGATCCTGTCAAGCTTAGCTCCTCCATCNGCAGATTCCCATGGCTATTGGCGTTATTGTAGATTGAACCATGCTAAATGTACTGGTTCACAGATCCAGTTTCTGCAAGGATTCAGGAATCACATGCTGAATGTTGTTAGAGGCTTCTCAAGATCAAATCAGAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAGGCCAGATACATGGTTTGCTCACAATTCTCCTGTCATTGGCAACAAGGCAATTGCTGTGGCTGTTGGAGACTGGTACTTCGACCGAGCAGGTGTTAAGGCCATTGATTGTCCTTACCCTTGTGATAATACATGCCACCATCTTGTTTTCAGATGAGCCAAATTTCACCAGTCGTCACAATTTCAATCATCTCACTCACTTGGGCCTATTCTATTCTCATCTGCAATTTATGTTTGCTATTCAGTTAATGATCAAAGACAATAAAAGGAAATGGTTGCTGAAAAGTGCAAATTTAATAAGCCTCTTCCATGATTTAGTAGTGTTAGGGAAATAAATTTTTATGTATAGATCAATTAGTTGGGAATGCTAAGGCAAATGCTTTTAATTTTTTACAAAGCTTGGGAGAGGTAATAGACTTCTAGAATTTATACATTGTAATAGGGTGAGCATTGGCAGTGATTGAATGAGATTATCTCAATCTCATATTTTCC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	49136	53713	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE13

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002902.1	PF03283.8	PAE	49	403	1.20E-158

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.679
SRR1783600	control	0.642
SRR1783602	moderate drought stress	0.471
SRR1811619	moderate drought stress	0.485

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.975
DRR006520	Root Summer glycyrrhizin high producing strain	0.808
DRR006521	Root Winter glycyrrhizin high producing strain	0.064
DRR006522	Root Winter glycyrrhizin high producing strain	0.063
DRR006523	Root Summer glycyrrhizin low producing strain	0.004
DRR006524	Root Summer glycyrrhizin low producing strain	0.107
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.602
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.123

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	37.832
SRR2868004	Drought Stress(Tissue:root)	15.456
SRR2967015	Control (Tissue:root)	14.918

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	51.008
SRR9715740	Leave	66.430
SRR9715741	Leave	28.184
SRR9715739	Root	0.359
SRR9715742	Root	0.100
SRR9715743	Root	0.225

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.617
SRR8749028	MeJA induced 9h	0.347
SRR8749029	MeJA induced 9h	0.230
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.006
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.738
SRR8400027	Control-Root	1.308