Gene detail information of Glyur000034s00002906.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09530.2 | 2.00E-56 | phytochrome interacting factor 3 |
| NR | KHN26204.1 | 0 | Transcription factor PIF3 [Glycine soja] |
| Swissprot | tr|Q9SBC5|PIF3_ARATH | 2.00E-77 | Transcription factor PIF3 |
| trEMBL | tr|K7N2G1|K7N2G1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G22291.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00034 | 99706 | 104922 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000034s00002906.2 | PF00010.21 | HLH | 482 | 528 | 1.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.115 |
| SRR1783600 | control | 6.178 |
| SRR1783602 | moderate drought stress | 9.466 |
| SRR1811619 | moderate drought stress | 9.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.375 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.216 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.179 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.564 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.467 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.550 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.350 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.945 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.530 |
| SRR2967015 | Control (Tissue:root) | 11.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.634 |
| SRR9715740 | Leave | 7.505 |
| SRR9715741 | Leave | 9.127 |
| SRR9715739 | Root | 4.062 |
| SRR9715742 | Root | 16.595 |
| SRR9715743 | Root | 14.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.407 |
| SRR8749028 | MeJA induced 9h | 5.303 |
| SRR8749029 | MeJA induced 9h | 3.620 |
| SRR8749030 | Uninduced | 1.837 |
| SRR8749031 | Uninduced | 1.676 |
| SRR8749032 | Uninduced | 1.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.271 |
| SRR8400027 | Control-Root | 18.204 |