Gene detail information of Glyur000034s00002925.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09460.1 | 1.00E-37 | Carbohydrate-binding X8 domain superfamily protein |
| NR | AES61493.2 | 0 | carbohydrate-binding X8 domain protein [Medicago truncatula] |
| Swissprot | tr|O65399|E131_ARATH | 1.00E-26 | Glucan endo-1,3-beta-glucosidase 1 (Precursor) |
| trEMBL | tr|G7IAB2|G7IAB2_MEDTR | 0 | Carbohydrate-binding X8 domain protein {ECO:0000313|EMBL:AES61493.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00034 | 204861 | 207718 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000034s00002925.1 | PF07983.8 | X8 | 434 | 504 | 2.00E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 121.721 |
| SRR1783600 | control | 122.523 |
| SRR1783602 | moderate drought stress | 132.382 |
| SRR1811619 | moderate drought stress | 132.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 94.621 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 92.623 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.382 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 67.047 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 65.771 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.530 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 41.684 |
| SRR2868004 | Drought Stress(Tissue:root) | 42.762 |
| SRR2967015 | Control (Tissue:root) | 57.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.962 |
| SRR9715740 | Leave | 2.745 |
| SRR9715741 | Leave | 3.137 |
| SRR9715739 | Root | 23.985 |
| SRR9715742 | Root | 42.699 |
| SRR9715743 | Root | 36.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.409 |
| SRR8749028 | MeJA induced 9h | 1.160 |
| SRR8749029 | MeJA induced 9h | 1.693 |
| SRR8749030 | Uninduced | 0.208 |
| SRR8749031 | Uninduced | 0.429 |
| SRR8749032 | Uninduced | 0.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 94.571 |
| SRR8400027 | Control-Root | 99.272 |