Gene detail information of Glyur000034s00002932.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G26749.15.00E-20C2H2 and C2HC zinc fingers superfamily protein
NRXP_007145029.11.28E-52hypothetical protein PHAVU_007G203900g [Phaseolus vulgaris]
Swissprottr|Q0JP11|C3H3_ORYSJ3.00E-34Zinc finger CCCH domain-containing protein 3
trEMBLtr|V7BJ32|V7BJ32_PHAVU5.00E-53Uncharacterized protein {ECO:0000313|EMBL:ESW17023.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00034236217237642+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000034s00002932.1PF06220.7zf-U15393.90E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control53.096
SRR1783600control55.055
SRR1783602moderate drought stress51.259
SRR1811619moderate drought stress50.300

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.220
DRR006520Root Summer glycyrrhizin high producing strain12.164
DRR006521Root Winter glycyrrhizin high producing strain25.731
DRR006522Root Winter glycyrrhizin high producing strain25.080
DRR006523Root Summer glycyrrhizin low producing strain22.973
DRR006524Root Summer glycyrrhizin low producing strain22.918
DRR006525Leaf Summer glycyrrhizin high producing strain23.065
DRR006526Leaf Summer glycyrrhizin high producing strain21.725

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.878
SRR2868004Drought Stress(Tissue:root)19.222
SRR2967015Control (Tissue:root)20.566

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.021
SRR9715740Leave14.833
SRR9715741Leave11.418
SRR9715739Root16.525
SRR9715742Root9.131
SRR9715743Root7.911

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h31.446
SRR8749028MeJA induced 9h30.160
SRR8749029MeJA induced 9h45.291
SRR8749030Uninduced22.416
SRR8749031Uninduced28.781
SRR8749032Uninduced30.344

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.723
SRR8400027Control-Root32.786

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved