Gene detail information of Glyur000034s00002939.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22460.1 | 2.00E-23 | O-acetylserine (thiol) lyase (OAS-TL) isoform A2 |
| NR | XP_004496722.1 | 1.05E-31 | PREDICTED: cysteine synthase-like [Cicer arietinum] |
| COG | YP_003727506.1 | 7.00E-21 | cysteine synthase A [Methanohalobium evestigatum Z-7303] |
| Swissprot | tr|Q43317|CYSK_CITLA | 7.00E-30 | Cysteine synthase |
| trEMBL | tr|V7BCG5|V7BCG5_PHAVU | 3.00E-31 | Cysteine synthase {ECO:0000256|RuleBase:RU003985} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00034 | 253939 | 257206 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01738 | cysK | EC:2.5.1.47 | Carbon metabolism | map01200 |
| Biosynthesis of amino acids | map01230 | |||
| Sulfur metabolism | map00920 | |||
| Cysteine and methionine metabolism | map00270 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.157 |
| SRR1783600 | control | 2.258 |
| SRR1783602 | moderate drought stress | 3.474 |
| SRR1811619 | moderate drought stress | 3.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.247 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.144 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.079 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.289 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.331 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.248 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.818 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.791 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.876 |
| SRR2967015 | Control (Tissue:root) | 8.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.260 |
| SRR9715740 | Leave | 4.505 |
| SRR9715741 | Leave | 6.701 |
| SRR9715739 | Root | 0.826 |
| SRR9715742 | Root | 2.949 |
| SRR9715743 | Root | 1.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.123 |
| SRR8749028 | MeJA induced 9h | 3.786 |
| SRR8749029 | MeJA induced 9h | 0.794 |
| SRR8749030 | Uninduced | 10.251 |
| SRR8749031 | Uninduced | 4.380 |
| SRR8749032 | Uninduced | 5.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.659 |
| SRR8400027 | Control-Root | 16.090 |