Gene detail information of Glyur000034s00002946.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G56560.10Plant neutral invertase family protein
NRXP_004495636.10PREDICTED: uncharacterized protein LOC101503498 [Cicer arietinum]
COGYP_007093517.10alkaline and neutral invertase [Chroococcidiopsis thermalis PCC 7203]
Swissprottr|Q9FXA8|INVA_ARATH0Alkaline/neutral invertase A, mitochondrial {ECO:0000305} (Precursor)
trEMBLtr|I1NEX3|I1NEX3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G22780.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00034289793293153+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH100


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0033926  glycopeptide alpha-N-acetylgalactosaminidase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000034s00002946.1PF12899.2Glyco_hydro_1001766154.90E-218


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.672
SRR1783600control7.455
SRR1783602moderate drought stress7.369
SRR1811619moderate drought stress7.199

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.580
DRR006520Root Summer glycyrrhizin high producing strain8.480
DRR006521Root Winter glycyrrhizin high producing strain8.013
DRR006522Root Winter glycyrrhizin high producing strain7.796
DRR006523Root Summer glycyrrhizin low producing strain7.061
DRR006524Root Summer glycyrrhizin low producing strain7.062
DRR006525Leaf Summer glycyrrhizin high producing strain25.445
DRR006526Leaf Summer glycyrrhizin high producing strain25.214

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.904
SRR2868004Drought Stress(Tissue:root)15.287
SRR2967015Control (Tissue:root)14.001

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave44.726
SRR9715740Leave61.749
SRR9715741Leave39.675
SRR9715739Root4.991
SRR9715742Root10.880
SRR9715743Root9.131

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.195
SRR8749028MeJA induced 9h6.315
SRR8749029MeJA induced 9h3.420
SRR8749030Uninduced5.125
SRR8749031Uninduced7.448
SRR8749032Uninduced7.339

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.731
SRR8400027Control-Root13.084

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved